BAC Information

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BAC

Clone NameMSMg01-109D12
Chromosome10 (Build37)
Map Location 56,849,855 - 56,850,175
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
Downstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109D12.T7 (MSMg01no109_d12.b1)MSMg01-109D12.TJ (MSMg01no109_d12.g1)
ACCAG322459AG322460
length820730
length of high quality
(start - end)
---324 (84 - 407)
definitionCHROMAT_FILE: MSMg01no109_d12.b1 PHD_FILE: MSMg01no109_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:21 2005CHROMAT_FILE: MSMg01no109_d12.g1 PHD_FILE: MSMg01no109_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTCCCAAATCTAATATTGCAACCGAAATACAACAACTATATCCAGAAA
ATACGCGGAATTCTTTAATATTATCCAAAAATAATTCCACCTTATTTCTC
ACTTGTAACATGCCTGTAAAGTTTCTGAAGCGCATGCAACATGTCCATGT
GTGTGCATCCATCCCCTAAACATAATCATTAAAATCACTACCTACATCAC
ACCTTTATTCCCTTTTATCCTCCCCCCTCCCTCCCCCCATATTTTTCCCC
CCCCTCTTATCCTATATATTATCACCCCCTTATTATCCCCAATTAACTCC
CATCCTTATCACAATAACATCTCCACCCAATCAATAACATCCCACCATAA
CCCCATCTCTACCATAAAAATATATAATATATACCCCAAAAAATATCCAT
TTATCATCCTCCCCCACCTCCCAAAAACTAAACCTAATACCAAAAAACCC
TCATCACAAACCATTTTTATATAAAAATAATAAAACCTCCCCTCTTTCAT
TCCTTCCTCCCTATACAACCTTAACCCAATTAACCCCATTTTTAACCCAT
TATAACCATTCTATCACAATATACATTAATATATAAAAAAACAAACCCAC
CACCAAACACATACTATAACATTACACATACCAACCAATAATACCTATTT
ACACACTCCCCCCATTTACACTAAAATCCCCCTTTATCAACTTCATATAC
CACTCCACAAACACACCCTTATCTTTAATCAAAAAATCTTAATATATCTT
TATCTCTTAAAAAATAAAACAAAAACTCCCCTCTATCCACATATTCCCCA
CACCCCTATCCAATAACCCG
TTTCTNNNTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTATTTGGAAGCAGG
AATTTTAATTTCATGGTTTTTAAACCTTGCTGTATAATAAAAGCAGCCCT
TAGTCTGAGGCTAATTGCTCTTACCATAATTTCACCTAGCCAATGAGCAG
CTCTGTCTCATTAACCCAAGGATTTGCTGTGCACTGCCAGGATTTCTTTA
CCACTTTACAGGAGGAATGGAAATGAATTTGTGACTCCTAGGCCTTGCTC
CATTTATTTACAGTCTCCCAGGAATCACTGTCCAACATTGCCTAATATTC
AGCCTCTGAACCAGGCTCATATATTTTGGTCAGTAGTTTGTTCAATCAGG
CAGGTGCACTAAAATCTGGGTCCCTGTAACTTCATTTTAGCCACAGGCAA
CATCTCCAGGGAACAATTGAAATCTCTTCATAAGCCGTTTTCCTACTTTG
AAATGTGATCTTCTTAAATTTTATTACATTACTTTCTTGTTTAAATTTTT
CTGTAATTCCAGATTGCCACAAGAGAGTGCCCAAATGTCTATCTTTCAGA
ACAATCAGATCTGTGGTAAAGTTTTTGCCAGTAAAATGAGCAAAACAAAA
ACAGTACTTTGAGTTCATAAAACCATTTTATTGTGAAATACAGCATAATA
AATGGTTGACTAAATTGCATAGTTTAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_d12.g1 MSMg01no109_d12.g1 CHROMAT_FILE:
MSMg01no109_d12.g1 PHD_FILE: MSMg01no109_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:21 2005
         (324 letters)



>mm_chr10_56849655_56850378
          Length = 724

 Score =  559 bits (289), Expect = e-164
 Identities = 313/321 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattatttggaagcaggaattttaatttcatggtttttaaaccttgctgtataataaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattatttggaagcaggaattttaatttcatggtttttaaaccttgctgtataataaaag 260

                                                                       
Query: 61  cagcccttagtctgaggctaattgctcttaccataatttcacctagccaatgagcagctc 120
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcccttagtctgaggcaaattactcttaccataatttcacctagccaatgagcagctc 320

                                                                       
Query: 121 tgtctcattaacccaaggatttgctgtgcactgccaggatttctttaccactttacagga 180
           || ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctcatcaacctaaggatttgctgcgcactgccaggatttctttaccactttacagga 380

                                                                       
Query: 181 ggaatggaaatgaatttgtgactcctaggccttgctccatttatttacagtctcccagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatggaaatgaatttgtgactcctaggccttgctccatttatttacagtctcccagga 440

                                                                       
Query: 241 atcactgtccaacattgcctaatattcagcctctgaaccaggctcatatattttggtcag 300
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 441 atcactgtccaacattgcctaatattcagcctcttaaccaggctcacatattttggtcag 500

                                
Query: 301 tagtttgttcaatcaggcagg 321
           |||||||||||||||||||||
Sbjct: 501 tagtttgttcaatcaggcagg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)