BAC Information

Click to search

BAC

Clone NameMSMg01-109E08
Chromosome10 (Build37)
Map Location 20,765,084 - 20,916,225
singlet/doubletdoublet
Overlap geneAhi1, Myb
Upstream geneMap3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202
Downstream geneLOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109E08.T7 (MSMg01no109_e08.b1)MSMg01-109E08.TJ (MSMg01no109_e08.g1)
ACCAG322499AG322500
length737742
length of high quality
(start - end)
292 (91 - 382)233 (72 - 304)
definitionCHROMAT_FILE: MSMg01no109_e08.b1 PHD_FILE: MSMg01no109_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:25 2005CHROMAT_FILE: MSMg01no109_e08.g1 PHD_FILE: MSMg01no109_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,765,084 - 20,765,375)(20,915,997 - 20,916,225)
sequence
TCATATTATTTTCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CGAGAAGAGCCGCGGAATTCATAGTATGTTCACTGAGGAGACCATGCCCT
ACAAAACTCATAAACTGGGGCCTGTGACTGATTTCTTCCTGTACATAATT
GCAGGGTGGAGAGGGGACATGGAAACTATAAGCTTTTATAACTTGTTGTA
AAAATCCTGTTTTCATTTATCAATGAAGTAGCATTTCAAAGCAGCTCTGC
TAAAGTTCCTGTTGAAAATCAAATGCACATACATAATAGGATCTCTTTTA
AAACCATGAGTGGCTGTTCATAATGACCATTTTCATTATTTATCCTCATT
CTCTCCTCTGAACACTGCGAGTTATAAAGCCTGTGTGAATTTTCCCATTG
TCACTTTGCTGACATTTATGGTTTTAGAACACCTCTCTCTTCTTTGTGCT
TTATTAAGTGTTTTTAGTCTATCAAACTTATTCTAGAATTTTCCTGTCTC
TGGAGCACTGTCAATTATAACCTAATTTTAAATTATCAGCACATGCTTAG
GACCTGTGTAAATGACATATCAAGCACTTGTCAGATACTCTACAGCAACA
ACCATGCCTGCCTGTTTCCATATACTAGGAGCAACCAATCATGCATGTCT
TCATAAACTAGGATAACCCACCCAATCCTGGCTGTCTTCTATAACAATGA
CCACACTTCTGACCGTTTCCCCCATTCCCCATTATAG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGCTTGAATTCCAACATAAGGGTCATAAACATGGGACATTT
AACATGCTGTGGTCCCTTCCTATATGTCACTATTTGAAAATGCACTAGAC
TAATCTAACTGGGCCGTATCCTGTGGCACACACTCTGTGCTGTTCTTACT
TATTGTCTTGTTGAGGCAGGGTCTTGCTGTGTGGCCTACGCTAGATAGTC
AGCCTTGAACTGTTGATCCTCCTGCCTCAGCTTTTAGAGTGCCAGAGTGG
TAGGTACAAGCCATTTTTTTTTTTCCCTTGCTCTGTTAGAGAGGGTTCAC
TCCAGAATGTTCAGCCTCTCATCCAATACCACAACAGGCTCAAGAACAGA
AAGTGGTGAACATCAGAAGCGCTTCTGATTTCGAAGCCTGGGCTCCTTGC
CCAGAGTCTCATCTGTCAGGTTCTTAACTACTCTGAGAAATCTTGAAAGG
AAGCTCATCCGCTCTTGTACAACCTCCATTTAGACTTTGTAAAATTCTCT
CAAACTTTTTAATTTTTTTCCTCACTCTCAAATTGCTTTGGGTAATATTA
TTATCAGCCCCATGCGTACCTATATATTGACCCTTACTAAGGATTAATTA
AATTAGGTCAGCGTCTTTTTTTTGTCCCCCCTAAAAAAAATTCTCTCATC
CTATTCTAAGCCTATTATTTTTATAACTTTTCAAAATTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_e08.b1 MSMg01no109_e08.b1 CHROMAT_FILE:
MSMg01no109_e08.b1 PHD_FILE: MSMg01no109_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:25 2005
         (292 letters)



>mm_chr10_20764884_20765575
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatgccctacaaaactcataaactggggcctgtgactgatttcttcctgtacataatt 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 accatgccctacaaaactcataaactggggcctgtggctgatttcttcctgtacataatt 260

                                                                       
Query: 61  gcagggtggagaggggacatggaaactataagcttttataacttgttgtaaaaatcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagggtggagaggggacatggaaactataagcttttataacttgttgtaaaaatcctgt 320

                                                                       
Query: 121 tttcatttatcaatgaagtagcatttcaaagcagctctgctaaagttcctgttgaaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcatttatcaatgaagtagcatttcaaagcagctctgctaaagttcctgttgaaaatc 380

                                                                       
Query: 181 aaatgcacatacataataggatctcttttaaaaccatgagtggctgttcataatgaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgcacatacataataggatctcttttaaaaccatgagtggctgttcataatgaccat 440

                                                               
Query: 241 tttcattatttatcctcattctctcctctgaacactgcgagttataaagcct 292
           ||||||||  ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 441 tttcattaagtatcctcattctctcctctgaacactgtgaattataaagcct 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no109_e08.g1 MSMg01no109_e08.g1 CHROMAT_FILE:
MSMg01no109_e08.g1 PHD_FILE: MSMg01no109_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:26 2005
         (233 letters)



>mm_chr10_20915895_20916527
          Length = 633

 Score =  404 bits (209), Expect = e-117
 Identities = 224/229 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacataagggtcataaacatgggacatttaacatgctgtggtcccttcctatatgtcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aacataagggtcataaacatgggacatttaacatgctgtggtcccttcctatatgtcact 272

                                                                       
Query: 61  atttgaaaatgcactagactaatctaactgggccgtatcctgtggcacacactctgtgct 120
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 271 atttgaaaatgtactagactaatctaactgggctgtatcctgtggcacacactctgtgct 212

                                                                       
Query: 121 gttcttacttattgtcttgttgaggcagggtcttgctgtgtggcctacgctagatagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 211 gttcttacttattgtcttgttgaggcagggtcttgctgtgtggcctacgctagatagcca 152

                                                            
Query: 181 gccttgaactgttgatcctcctgcctcagcttttagagtgccagagtgg 229
           ||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 151 gccttgaactgttgatcctcctgcctcagcttccagagtgccagagtgg 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)