BAC Information

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BAC

Clone NameMSMg01-109F14
Chromosome10 (Build37)
Map Location 26,005,429 - 26,006,033
singlet/doubletsinglet
Overlap geneL3mbtl3
Upstream geneAkap7, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3
Downstream geneLOC435208, LOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109F14.T7 (MSMg01no109_f14.b1)MSMg01-109F14.TJ (MSMg01no109_f14.g1)
ACCAG322558AG322559
length752721
length of high quality
(start - end)
---605 (87 - 691)
definitionCHROMAT_FILE: MSMg01no109_f14.b1 PHD_FILE: MSMg01no109_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:32 2005CHROMAT_FILE: MSMg01no109_f14.g1 PHD_FILE: MSMg01no109_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGCCACATCTAAATTGCGGCGCTAATACGATCCTATTCGAGAGGACCG
CGGATTCTGATTTTTCCCTGTATGAAGAGTTTGTATGAGAATTTACAGAG
CCTGAAATAAGTCAGAACATTTCTGGTCATGTTATTAATTCCCAATCATG
TGAGAACATGCTGTCCACCAGTGATGCCTCAAACCAGACCTTGTACCCGT
ATTAGAGTTTTCTACGACGAGCATAACATTCGACGATAGTGTCCTCTAAG
GTTGCCTACATAATCCGCTTACTTGACACATCTATAGTACCCCATCTACG
GCCATTTCCTGCCCCACAGTTTCACTCTCTACCATTTGCTTATTTTTTAT
CACCCTGTACCTCTTTTTCCCCCTCCCCTCCCTCCATACTGGACTATTCC
TGACGACCCGCTCAACTCCCTGATTATATTTTTCTCAACCCCCTTTTACT
CCTTTCTCCCTACCTTCCTTCCCCTTTCACACTTCTTTTCCCCTCTTTCC
CGTCTTTCCCCTGATCTATTTTTTTTATGACCCTTCCCCTCCTTTTCCCA
TCCTTTTCCTTCCCCCCTCCCTCCCTTTTTTCCCTTTTCCTCCCCTCCCC
TCCTTTACCCCTTCCATCCCCCTATTCCCCCTTCAATTTCCCCTCCCCCT
CCCCCCTCTTTCCTTTTCCCACCTTCCTTTTTTCGCCTTCCCTCTAACCA
TATTCCTTCCGCCCTCCTTCTCCCTTTTCCCCCCCTCCTTTTCCCTTCCC
CN
AATAATANNNNNCCGATGATAGTGAGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAACGAGGATTT
CATCTCTGTATACAGGAAGAAACTTAACAGAGGTCCAGAAATTGGGATAG
AGGGATTCCTCACCTCTTAGAGGAGAGGAATACTGGTCCCCCAATTAAGA
AAAGAAATTTTAATAAAATGTAAGGTAATTAGGAACGTGAAGGCAGAGAC
TTCCTTCCCAACGTTCTCAAGGAAGGCAGGTTGAGAATAAGCATGTGGCA
TGAAGCATACTCTTTACCATCCTGGAACAGGGGCATGCATTTGATTTTGG
AGTACCCATGTGTAAGCATTAAAGAGTTTGGTTCTATTTATAGATTCTTG
GTGTTTGGGGAGACCTGGTTCTGTCCTTGCCCCTGTAAATGTAGGCATGA
TGTTTTAGTGTATAAAATACCAGACCTAACCCCAGGAAGTGCTACAGACC
ATCTAAGCTGCCAGCTACTCCGCTGGTGTTTGGCTTGTAGCGTGTTCGGA
AGGATGCTGCCCTACCCCTCCCTCATGTCTGGATGTGCTCTCTCTTGGGT
TCTGTTGACCTCAGTTGCCTCATCTCATCACCGGTTCTGTTTGTCCATCG
GCTTGACTGCTTTCGTTCTAGCAGACTGAGGCTCCTTCCACTCCCATTGC
AGCTAAGGATTCCGCATGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_f14.g1 MSMg01no109_f14.g1 CHROMAT_FILE:
MSMg01no109_f14.g1 PHD_FILE: MSMg01no109_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:32 2005
         (605 letters)



>mm_chr10_26005229_26006233
          Length = 1005

 Score = 1147 bits (593), Expect = 0.0
 Identities = 602/605 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaacgaggatttcatctctgtatacaggaagaaacttaacagaggtccagaaattggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtaacgaggatttcatctctgtatacaggaagaaacttaacagaggtccagaaattggg 746

                                                                       
Query: 61  atagagggattcctcacctcttagaggagaggaatactggtcccccaattaagaaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atagagggattcctcacctcttagaggagaggaatactggtcccccaattaagaaaagaa 686

                                                                       
Query: 121 attttaataaaatgtaaggtaattaggaacgtgaaggcagagacttccttcccaacgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attttaataaaatgtaaggtaattaggaacgtgaaggcagagacttccttcccaacgttc 626

                                                                       
Query: 181 tcaaggaaggcaggttgagaataagcatgtggcatgaagcatactctttaccatcctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcaaggaaggcaggttgagaataagcatgtggcatgaagcatactctttaccatcctgga 566

                                                                       
Query: 241 acaggggcatgcatttgattttggagtacccatgtgtaagcattaaagagtttggttcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaggggcatgcatttgattttggagtacccatgtgtaagcattaaagagtttggttcta 506

                                                                       
Query: 301 tttatagattcttggtgtttggggagacctggttctgtccttgcccctgtaaatgtaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttatagattcttggtgtttggggagacctggttctgtccttgcccctgtaaatgtaggc 446

                                                                       
Query: 361 atgatgttttagtgtataaaataccagacctaaccccaggaagtgctacagaccatctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgatgttttagtgtataaaataccagacctaaccccaggaagtgctacagaccatctaa 386

                                                                       
Query: 421 gctgccagctactccgctggtgtttggcttgtagcgtgttcggaaggatgctgccctacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctgccagctactccgctggtgtttggcttgtagcgtgttcggaaggatgctgccctacc 326

                                                                       
Query: 481 cctccctcatgtctggatgtgctctctcttgggttctgttgacctcagttgcctcatctc 540
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctccctcatgtctgtatgcgctctctcttgggttctgttgacctcagttgcctcatctc 266

                                                                       
Query: 541 atcaccggttctgtttgtccatcggcttgactgctttcgttctagcagactgaggctcct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 atcaccggttctgtttgtccatcggcttgactgctttcgttctagcagactgaggctcca 206

                
Query: 601 tccac 605
           |||||
Sbjct: 205 tccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)