BAC Information

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BAC

Clone NameMSMg01-109G02
Chromosome10 (Build37)
Map Location 100,985,569 - 100,985,838
singlet/doubletsinglet
Overlap genenone
Upstream gene4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c, LOC667652, Nts, Pamci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109G02.T7 (MSMg01no109_g02.b1)MSMg01-109G02.TJ (MSMg01no109_g02.g1)
ACCAG322581AG322582
length735772
length of high quality
(start - end)
386 (64 - 449)272 (73 - 344)
definitionCHROMAT_FILE: MSMg01no109_g02.b1 PHD_FILE: MSMg01no109_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:35 2005CHROMAT_FILE: MSMg01no109_g02.g1 PHD_FILE: MSMg01no109_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTCTCTTTNCCCCCTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTTTGTTTACCTCTATGCCACATTTTTT
AATGGGGTTATTTGGTTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATA
TATTGGATATTAGTCTCCTATCTAATTTAGGATTGGTAAAGATCCTTTCC
CAATCTGTTGGTGGCCTTTTTGTCGTATTAAGAGTGTCTTTTGTCTTACA
GAAACTTTGCAGTTTTATGAGGTCACATTTGTCAATTCTTGATCTTACAG
CACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTCCCCATATCT
TTGAGGCGTTTCCCCACTTTCTCCTCTATAAGTTTTAGTATCTCATTTTA
AGTGGAATTCCTTGATCCACTTAGACTTGACTTTAGTACAAGGAGATAAC
AATGGATTCAATTCTCATTCTTCAACATGATAACCGCCAGTTGTGCCAGC
ACCATTTGTTGAAAATGCTTGTCTTTTTTCCACTTGGATGGTTTTATCTC
CCTTGTTACAAATCAAATGATCCATACGTTTGTGGGTTCATTTCTGAGTT
TTCAATTCTATTCCATTGCCCTAACCTGTCTGTTGCTATACCCTGTAACC
ATGCAGCTTTTATTCCAACTGCTCTGTAGCACACGCTTTACTCCCGGCAT
GGTTGTTCTCCCAAAGAATCCTTTGACCCATGTTA
AATACAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAAGAATTATCTAGCAGTTTATTTTTT
AATTTATGTGTAATAAGACTCTATTGATTACATATTTCCTTGAGTTTTTA
CTGCATAAAAATCATTGGCATGTCATTATTAGTCAATTGTTAACAAATAA
TGTTCTTGCTATAACAATAAATAAATTTACACTTTCATCTATCTCTTTTG
TGCAGTCTAAAACAGTAACAGAATTTACAATGTTGTTTCAGGCCATATAT
TTCTGATATGTGTATTCTAGACCAAAATTTATTATATTCCATTAAGAAGC
ATACAATAATTATAAGTTATCTACTATTTTATATATAAAATTGGGCTATT
AATTTTTCATGTTTTAAATTATTATATTTACTGACTCCAAAAGCTCATGT
TTTATTCTTTGCCTGTAATAATTACTTTTTCTTGTTATTTAATAAAAATA
TCTTAACATTAATTTTGAGAACAATATATATAATTCTTACCTATCAACAT
ACACTACTGCTCGGCTCAACAGCAACAATTTAAATCATCAACATCCCGAC
TCAACTTCTTGTCTCTTCCATCTCCCAATAGCAACCAATTGATTGCCTTA
ATATTCCCCTTCCCTAACAAAAAAAACCCACTCTGCGCTTCGTATACAAT
TATATTACCCCAAATTTCGTTTTAACACATTACCTTATATTTTACCTTCT
TTCTCTATTTTTTCCACATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_g02.g1 MSMg01no109_g02.g1 CHROMAT_FILE:
MSMg01no109_g02.g1 PHD_FILE: MSMg01no109_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:35 2005
         (272 letters)



>mm_chr10_100985369_100986038
          Length = 670

 Score =  476 bits (246), Expect = e-139
 Identities = 265/272 (97%), Gaps = 2/272 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagaattatctagcagtttattttttaatttatgtgtaataagactctattgattaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aaaagaattatctagcagtttattttttaatttatgtgtaataagactctattgattaca 411

                                                                       
Query: 61  tatttccttgagtttttactgcataaaaatcattggcatgtcattattagtcaattgtta 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 410 tatttccttgagtttttactgcttaaaaatcattggcatgtcattattagtcaattgtta 351

                                                                       
Query: 121 acaaataatgttcttgctataacaataaataaatttacactttcatctatctcttttgtg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acaaataacgttcttgctataacaataaataaatttacactttcatctatctcttttgtg 291

                                                                       
Query: 181 cagtctaaaacagtaacagaatttacaatgttgtttcaggccatatatttctgatatgtg 240
           |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| 
Sbjct: 290 cagtctaaaacagtaacagaatttacaaagttgttttaggccatatttttctgatatgt- 232

                                           
Query: 241 tattctagaccaaaatttattatattccatta 272
            |||||||||||||||||||||||||||||||
Sbjct: 231 -attctagaccaaaatttattatattccatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 670
Length adjustment: 9
Effective length of query: 263
Effective length of database: 661
Effective search space:   173843
Effective search space used:   173843
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)