BAC Information

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BAC

Clone NameMSMg01-110C13
Chromosome10 (Build37)
Map Location 58,303,818 - 58,454,897
singlet/doubletdoublet
Overlap geneSh3md4
Upstream geneLOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
Downstream geneSept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110C13.T7 (MSMg01no110_c13.b1)MSMg01-110C13.TJ (MSMg01no110_c13.g1)
ACCAG323157AG323158
length680692
length of high quality
(start - end)		573 (51 - 623)567 (96 - 662)
definitionCHROMAT_FILE: MSMg01no110_c13.b1 PHD_FILE: MSMg01no110_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:38 2005CHROMAT_FILE: MSMg01no110_c13.g1 PHD_FILE: MSMg01no110_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,454,328 - 58,454,897)(58,303,818 - 58,304,384)
sequence
GCGGGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGATGGTCTCTGGTGGTCCTAAATAATTCTAAGTTGGCAC
TGTGACTATGAAGTGACTGTTTAAGAGCCTCTCTTCCCAAGAATTAGGGA
TAATACATATGTAAAGGGTTCAAGTGACATGTCAGCACCACCTTCTATAA
AGATCTCTAAATCAAAATTTTAAATAATTTATCTCCCTCCTCCAACATTT
ATGCATTCATTTAACTTTTTGTCCTCGAGGAACAAGGAATCTACAAGCCT
CTGTCAAGAACAGCAGCTTTAGGTAGCTATCTCTACCCCTTCCCAGACTG
CCAGAGCACATTGCCCTTGGACACTACTTTACAGGCACAGCTTGCTTGGC
ACAGATGGGTCCCTTCAGCAATGCTGGAAAAAGAAGAACACATGCAATGG
ACATTTTAGTCCCTTGAATGAATCACATGGCAATAGCATGTGTAGAATCC
CTGGGATCACTTCTTGGCCTTTTGGCTAAGATCAAAAGTGTAGAGTCCCT
GGGGGCAGTTTCTGAAGGTCATGAAGCCACAGTTTTCTCCCTACTGTAGT
TAAGGGGCGTCTGAAAAAGTGGTAGCAAATCAGAGCCCGGAAAACCAAGT
ACCTTCAGCTTTCTAGGTTGACCCCAATCN

NNNNNNNAATCACCCNNNNNCCGATGATAGTXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGT
TATTGTGCATGCATAGAGAAGGAAGATGAATTTTGACTTTAAGTGCCCTT
TGTACTGAAAATGATTTGCCACATCTCATCCATTTCTGTTCTGGTGACCT
GCTGAGGACCCGGGCACTTGGGCTCCTATTCTGTAAGGACTCATGTGACG
TAGCGCACATGCACTCAACACAGGGCCATAGCCTTGTCATGGCTTGGATT
TGTGCAGAGCCACAGCCGAGATGTCTCCTGTGGGGAGTCGATCCAGACGC
TTTATGGGCATGGTTTATTCCTCGGAGGGTTTGAACCTTTCATGCCTCCC
AGAGGCATAGCCGGCCTATATGACACAGCCTCATAGTGCCATAGGCTCAG
TCCTGATGTCCCCAAAGGGGAGGCTACAGGTTCATGCTTATCCCAGCTAA
TGCCTCTGCCTCAGGTAACAAAGATACCATACTTGGTCTATACAGATTCA
TTTTGAACAACCTCATTGTGCATTTTTATGTGTCTTAGTTAGGGTTTTAC
TGCTGTGAACAGACACCATGACTAAGGCAACTCTTATAAAGGACAGCATT
TAATTGGGGCTGGTTTACAGGTTCAGAGGTTCAGTCCATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_c13.b1 MSMg01no110_c13.b1 CHROMAT_FILE:
MSMg01no110_c13.b1 PHD_FILE: MSMg01no110_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:38 2005
         (573 letters)



>mm_chr10_58454243_58455215
          Length = 973

 Score = 1040 bits (538), Expect = 0.0
 Identities = 562/570 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagatggtctctggtggtcctaaataattctaagttggcactgtgactatgaag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggaattcagatggtctctggtggtcctaaataattctaagttggcactgtgactatgaag 596

                                                                       
Query: 64  tgactgtttaagagcctctcttcccaagaattagggataatacatatgtaaagggttcaa 123
           || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 595 tggctgtttaagagcctctcttcccaagaattagagataatacatatgtaaagggttcaa 536

                                                                       
Query: 124 gtgacatgtcagcaccaccttctataaagatctctaaatcaaaattttaaataatttatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtgacatgtcagcaccaccttctataaagatctctaaatcaaaattttaaataatttatc 476

                                                                       
Query: 184 tccctcctccaacatttatgcattcatttaactttttgtcctcgaggaacaaggaatcta 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttcctcctccaacatttatgcattcatttaactttttgtcctcgaggaacaaggaatcta 416

                                                                       
Query: 244 caagcctctgtcaagaacagcagctttaggtagctatctctaccccttcccagactgcca 303
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 415 caagcctctgtcaagaacagcaggtttaggtggctatctctaccccttcccagactgcca 356

                                                                       
Query: 304 gagcacattgcccttggacactactttacaggcacagcttgcttggcacagatgggtccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gagcacattgcccttggacactactttacaggcacagcttgcttggcacagatgggtccc 296

                                                                       
Query: 364 ttcagcaatgctggaaaaagaagaacacatgcaatggacattttagtcccttgaatgaat 423
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 295 ttcagcaatgctggaaaaagaagaacacacgcaacggacattttagtcccttgaatgaat 236

                                                                       
Query: 424 cacatggcaatagcatgtgtagaatccctgggatcacttcttggccttttggctaagatc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cacatggcaatagcatgtgtagaatccctgggatcacttcttggccttttggctaagatc 176

                                                                       
Query: 484 aaaagtgtagagtccctgggggcagtttctgaaggtcatgaagccacagttttctcccta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aaaagtgtagagtccctgggggcagtttctgaaggtcatgaagccacagttttctcccta 116

                                         
Query: 544 ctgtagttaaggggcgtctgaaaaagtggt 573
           |||||||||||||| |||||||||||||||
Sbjct: 115 ctgtagttaaggggtgtctgaaaaagtggt 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no110_c13.g1 MSMg01no110_c13.g1 CHROMAT_FILE:
MSMg01no110_c13.g1 PHD_FILE: MSMg01no110_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:39 2005
         (567 letters)



>mm_chr10_58303618_58304584
          Length = 967

 Score = 1004 bits (519), Expect = 0.0
 Identities = 555/567 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttattgtgcatgcatagagaaggaagatgaattttgactttaagtgccctttgtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgttattgtgcatgcatagagaaggaagatgaattttgactttaagtgccctttgtac 260

                                                                       
Query: 61  tgaaaatgatttgccacatctcatccatttctgttctggtgacctgctgaggacccgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaaatgatttgccacatctcatccatttctgttctggtgacctgctgaggacccgggc 320

                                                                       
Query: 121 acttgggctcctattctgtaaggactcatgtgacgtagcgcacatgcactcaacacaggg 180
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 321 acttgggctcctattctgtaaggactcatgtgacatagcacacatgcactcaacacaggg 380

                                                                       
Query: 181 ccatagccttgtcatggcttggatttgtgcagagccacagccgagatgtctcctgtgggg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ccatagccttgtcatggcttggatttgtgcagagccacagccaagatgtctcctgtgggg 440

                                                                       
Query: 241 agtcgatccagacgctttatgggcatggtttattcctcggagggtttgaacctttcatgc 300
           |||||||| || ||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct: 441 agtcgatcaaggcgctttatgggcatggtttgttcctcagagggtttgaaccttttatgc 500

                                                                       
Query: 301 ctcccagaggcatagccggcctatatgacacagcctcatagtgccataggctcagtcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcccagaggcatagccggcctatatgacacagcctcatagtgccataggctcagtcctg 560

                                                                       
Query: 361 atgtccccaaaggggaggctacaggttcatgcttatcccagctaatgcctctgcctcagg 420
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 atggccccaaaggggaggctacaggttcatgcttatcccagataatgcctctgcctcagg 620

                                                                       
Query: 421 taacaaagataccatacttggtctatacagattcattttgaacaacctcattgtgcattt 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacaaagataccatagttggtctatacagattcattttgaacaacctcattgtgcattt 680

                                                                       
Query: 481 ttatgtgtcttagttagggttttactgctgtgaacagacaccatgactaaggcaactctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatgtgtcttagttagggttttactgctgtgaacagacaccatgactaaggcaactctt 740

                                      
Query: 541 ataaaggacagcatttaattggggctg 567
           |||||||||| ||||||||||||||||
Sbjct: 741 ataaaggacaacatttaattggggctg 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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