BAC Information

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BAC

Clone NameMSMg01-110G17
Chromosome10 (Build37)
Map Location 83,071,952 - 83,072,363
singlet/doubletsinglet
Overlap geneAppl2
Upstream gene1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik
Downstream gene1500009L16Rik, LOC100041225, C230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110G17.T7 (MSMg01no110_g17.b1)MSMg01-110G17.TJ (MSMg01no110_g17.g1)
ACCAG323350AG323351
length736737
length of high quality
(start - end)
339 (45 - 383)414 (87 - 500)
definitionCHROMAT_FILE: MSMg01no110_g17.b1 PHD_FILE: MSMg01no110_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:00 2005CHROMAT_FILE: MSMg01no110_g17.g1 PHD_FILE: MSMg01no110_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCCATGACTTTTATCATGAAGGGGTGTTGGATTTTATC
AAATGCTTTCTTAGCATCTAACAAGATGATCATGTGATTTTTGTCTTTGA
GTTAGTTTATATAGTGGATTACATTGATGGGTTTCCGTATGTACTGGCTA
GTTTTGTATCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTC
AGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATT
AGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCACCTCTGGGCTGG
TAGTCTTGGTTTTATAAGAGAGCAGGCTGAGCTAGCCAGGGGAATCAAGC
CAGTAAAGAACATCCCTCCATGGTCTCTGTATCAGCTCCTGCTCCCTGAC
CTGTTTGAGTTCCAGTTCCTGACTTCTTTCAGTGATAAACAGCAATGTGT
AAATGTAAGACGAATAAACCCTTCCCTCCCCAACTTGCTTCTTGGTCATG
ATGTTTTGCTTATTAATACATCCCTCGCACTTATACACCGTATATCTACT
TCTTTCCCTGTCTTCCCGTTTATGAACCCTTATTTGGTCTTCATCCCTTG
CCCGCCTTTTTTTTCCCCCTTTTTCTTTTTTTTCCTTTATGCTTTCTTTA
TCTCTCTTCTTTTCTCTTTTTACCCTTCTTTATTTC
ATAGTTNNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAAGGGACAGA
GGAATGGCTGGCACAATGGTATAACGGAGCCGGTGCAAGGAGAATTGGCT
AAGCATTGGGATGGAACTCACAGGAACAGGAACACGTGGCATGTTTGCTG
TCTCTCTCAAGCGGTGATCTAGTGAGTGGAAAGGGGATTTTCAGAAAATT
ACAGTTGGGTTGCAGTGAAGTGTCAGGTCCAGATGTTTTGTTTTTTAAGC
TAACATGTCTTCAGTACCTACTATGTGTCAGTGTGAGCTGGCTGTAGCCT
CAGTCCTAAAAACCCATCTCTAAGGGAGAAATTAGTATGTAAGTCCTAAC
GCACTGCTCAGAATGGTGAGCAGCAGACCCACTGACTATAGCATGAAGAA
CTGAATGGCTCTAAGCAAGGACGTGCAGTTGTGGAAGGTTTATTTGTATA
ATGTCCTGATAGCAGTTGGAGGCTCCTTTGTATTTCAATATGTAAAAGAC
ACAGCAGCATTAACCAAGTGCAAACATTGATCAAGATTTTCTCCCTTTTT
ATATTTTAGTCAAAACATAATATATTCTTACATATAAGATGACCACATTG
ATCCCATTGCTACCGTCCACTTTTCCTGAAACAAATGACCTGATTGCACC
TTGCGAATCCCCTTCATTTTGATTTTGTACTTCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_g17.g1 MSMg01no110_g17.g1 CHROMAT_FILE:
MSMg01no110_g17.g1 PHD_FILE: MSMg01no110_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:00 2005
         (414 letters)



>mm_chr10_83071752_83072565
          Length = 814

 Score =  735 bits (380), Expect = 0.0
 Identities = 404/412 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaagggacagaggaatggctggcacaatggtataacggagccggtgcaaggagaatt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agagaagggacagaagaatggctggcacaatggtataacggagccggtgcaaggagaatt 553

                                                                       
Query: 61  ggctaagcattgggatggaactcacaggaacaggaacacgtggcatgtttgctgtctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggctaagcattgggatggaactcacaggaacaggaacacgtggcatgtttgctgtctctc 493

                                                                       
Query: 121 tcaagcggtgatctagtgagtggaaaggggattttcagaaaattacagttgggttgcagt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcaagcggtggtctagtgagtggaaaggggattttcagaaaattacagttgggttgcagt 433

                                                                       
Query: 181 gaagtgtcaggtccagatgttttgttttttaagctaacatgtcttcagtacctactatgt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 432 gaagtgtcaggtccagatgttttgttttttcagctaacatgtcttcagtacctactatgt 373

                                                                       
Query: 241 gtcagtgtgagctggctgtagcctcagtcctaaaaacccatctctaagggagaaattagt 300
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 372 gtcagtgtgagctggctgtagcctcagtcctaaaaacccatttctaagggagaaattatt 313

                                                                       
Query: 301 atgtaagtcctaacgcactgctcagaatggtgagcagcagacccactgactatagcatga 360
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 312 atgtaagtcctaacgcactgctcagaatggtgagcagcagagggactgactatagcatga 253

                                                               
Query: 361 agaactgaatggctctaagcaaggacgtgcagttgtggaaggtttatttgta 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agaactgaatggctctaagcaaggacgtgcagttgtggaaggtttatttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)