BAC Information

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BAC

Clone NameMSMg01-110J01
Chromosome10 (Build37)
Map Location 28,931,808 - 28,932,324
singlet/doubletsinglet
Overlap genenone
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
Downstream geneEchdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110J01.T7 (MSMg01no110_j01.b1)MSMg01-110J01.TJ (MSMg01no110_j01.g1)
ACCAG323458AG323459
length716708
length of high quality
(start - end)
376 (58 - 433)517 (73 - 589)
definitionCHROMAT_FILE: MSMg01no110_j01.b1 PHD_FILE: MSMg01no110_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:11 2005CHROMAT_FILE: MSMg01no110_j01.g1 PHD_FILE: MSMg01no110_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTAAATCNNCTCGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGG
GTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGG
ATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACT
TTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAG
CCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGG
CTTTTCCCCACTTTCTCCTCTATAAGTTTAAGCGCCTCTGGTTTTATGTG
AAGTTCTTTGATCCATTTAGATTTGACCTTACTACAAGGAGATAAGTATG
GATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAT
TTGATGAATATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTTGT
CGAAGATCTAGTGATCATAGGTGTGTGCTTTCATTCTTGGGACCCCCACT
CATTTCCTTGGTTCCCTTGTCTGCCTTTATCCCTTACCATGCTTACCTTA
CCCTCTTTGCCTCGCCTCTTGTTTCTCGCCCCCTCCTCGCCTTTCTTCCC
TCTTTCCTTTTCCTTC
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAAGAAGCCAATCTTGTTTTCTCATCG
GGTCACCATCTTTATTCTTGGATCTCCTCATAGTCTCAATTTAAGCCACA
TGCGCATTAGTTTTAGTTCCCTTAACCAATAAGATACAAGCTTTGATTAA
AAACAACTCTTGGTTTGCAGGAAACAAACACCAGTGTCTTTTAACTCACA
TTATGAAAAATACTCCTCCTGGAGTGTAATAGTAGTTTTGAATAAAACTA
CATTTTTTTTTAAATTACGAATTTCAAATAACAGAGAACTCACAGGTTGT
AAATTTTATATCGCAGATATTAAAAATAACTTCATCCCACCACAGACTGC
ATTCTAATAAATAGTTAATAGAAACTTACACTGAGCAACGTTTTTCTGAA
CTGCTGAGAATGAATGAGAAACAGTCTCAGGGTGAGGATGTGGCTGTCAG
TCCAAGCTTTAGAAATCCACCCTTAGCAGTTGAACAGTCTCTTCTCCAAG
GCAGTTGAATCCCTTATGTACCCTGCCCACTGTTCGGAGGGCCAGCCACA
AGCACAGCCAGGTCATGAGATGCTGATTACACACTTACTTAAATCTCATT
CTTTAACCTAAATTCCGAAAGCAGATCCTGCTCTACCCAGGTTGCTCGTT
CAAGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_j01.g1 MSMg01no110_j01.g1 CHROMAT_FILE:
MSMg01no110_j01.g1 PHD_FILE: MSMg01no110_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:11 2005
         (517 letters)



>mm_chr10_28931608_28932524
          Length = 917

 Score =  953 bits (493), Expect = 0.0
 Identities = 511/517 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagaagccaatcttgttttctcatcgggtcaccatctttattcttggatctcctcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caaagaagccaatcttgttttctcatcgggtcaccatctttattcttggatctcctcata 658

                                                                       
Query: 61  gtctcaatttaagccacatgcgcattagttttagttcccttaaccaataagatacaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtctcaatttaagccacatgcgcattagttttagttcccttaaccaataagatacaagct 598

                                                                       
Query: 121 ttgattaaaaacaactcttggtttgcaggaaacaaacaccagtgtcttttaactcacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttgattaaaaacaactcttggtttgcaggaaacaaacaccagtgtcttttaactcacatt 538

                                                                       
Query: 181 atgaaaaatactcctcctggagtgtaatagtagttttgaataaaactacattttttttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgaaaaatactcctcctggagtgtaatagtagttttgaataaaactacattttttttta 478

                                                                       
Query: 241 aattacgaatttcaaataacagagaactcacaggttgtaaattttatatcgcagatatta 300
           |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 477 aattacaaatttcaaataacagagaactcacaggttgtaaattttatatcacagatatta 418

                                                                       
Query: 301 aaaataacttcatcccaccacagactgcattctaataaatagttaatagaaacttacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaaataacttcatcccaccacagactgcattctaataaatagttaatagaaacttacact 358

                                                                       
Query: 361 gagcaacgtttttctgaactgctgagaatgaatgagaaacagtctcagggtgaggatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 357 gagcaacgtttttctgaactgctgagaatgaatgagaaacagtctcaggatgaggatgtt 298

                                                                       
Query: 421 gctgtcagtccaagctttagaaatccacccttagcagttgaacagtctcttctccaaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 297 gctgtcagtccaagctttagaaatccacccttagcagttgaacagccccttctccaaggc 238

                                                
Query: 481 agttgaatcccttatgtaccctgcccactgttcggag 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 agttgaatcccttatgtaccctgcccactgttcggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)