BAC Information

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BAC

Clone NameMSMg01-110N22
Chromosome10 (Build37)
Map Location 100,384,227 - 100,384,797
singlet/doubletsinglet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110N22.T7 (MSMg01no110_n22.b1)MSMg01-110N22.TJ (MSMg01no110_n22.g1)
ACCAG323685AG323686
length711706
length of high quality
(start - end)		576 (45 - 620)632 (75 - 706)
definitionCHROMAT_FILE: MSMg01no110_n22.b1 PHD_FILE: MSMg01no110_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:35 2005CHROMAT_FILE: MSMg01no110_n22.g1 PHD_FILE: MSMg01no110_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGGTGTCATACACCATCAATTTAGGAAGTATTGAAGAAGCAATG
CTAATTACAGTGTGAACTTTAGGAACTCTTGTTGACAGTAAGGGCCCTGC
AATAAAATTAGGAATGACACAGGGTAACTAATTGGTGATTCACAGTGCAA
TGTGAAAAGCTAGAGGACCCCTTAGCACAGGGAGAAACCTTCCAGCAATG
AGATCAGAACACAGAGGAATCTGGAGTCACCTTTTGAAAGTAAAAGTAGC
TGAATTCTAAAGCGGTTACATCTTTAGACTCCTTTAGGCCTGATGATCTC
AAATTGCCTCATTCTCCAAGGCTATAAAAGTGGCCCAATTCTGGTGCTGG
AAAGATGGCTGACCCCTTAAGGGTAATTAACTGTTCTTCTAGAGAATGCA
GGTTCTTCTAGCACTCACATGGCAGTTAAAACAGTCTATAACTCCAAGTC
TAGGGGATCAGACACTTAGACAGATACACATGTGGGCAAAACACCAACAT
ACAGAAAATAAAGATAAGCAAATCATAAAATATGGCACAATTAATTTTGG
GTGGTGGTGGTTTTGTTTTGNNTTTTTTTTCTCTATTCTTTCTTGCTTTT
ATATTCTTCTCTTTATTCNATACTTCCCTTTTCCCCTCCCTCTTCTGTTT
TTTTTATTATN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGGCAGCTCCCTGTAAAATAGGGT
GGCATCTGGGACCCTGAGAAGCAGGAGACACATGCCTCCAGAGGACCCTC
CATCTGAAATAAGGGACTTCCTGCAGCAGGCCAGGATGGAAACATCTCAG
TAGCCCAAGGCGGCTCTATGTAAAAAACAATTGTTCCAATTTTTCCTAAC
CTTAGCCCTGTACAATGGCTGTATACATTTTATTTGTGCATGGCTGATTT
TCACTTGGTCTGGGTGTACATAGTTATTCTATTATATCTGAACTTTCTAT
TTCTTTCTCCTTCTGCTCTGGTGAATTCTGTGAAACTAGGTGTTCTTTGA
TGTAATGATTCTTAAACAATTAAAAATTGAGGCATAGGGGCACAATATTG
TCCTAATGACCCAGGTGTATATTGTGTGTTCTCTTCTTGGAAACAATGTA
ATAACTGCACATTAATCTGGAATTAATGCTTGACTTGCAAAGAAAGTTTA
AAGAAGTTATTAGAAAATGAAGTAGAGCCAACATTGGAATTGGAAGAAAG
AAAGAAAAAACTATTGAAGTTATAAAATAAGTTTTGCATAATATTTAAGA
GTAGTTCACAGATAAACAAGAATAAAATGCATAAAATTATATACTAGTAA
AATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_n22.b1 MSMg01no110_n22.b1 CHROMAT_FILE:
MSMg01no110_n22.b1 PHD_FILE: MSMg01no110_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:35 2005
         (576 letters)



>mm_chr10_100384023_100384997
          Length = 975

 Score = 1075 bits (556), Expect = 0.0
 Identities = 568/572 (99%), Gaps = 1/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggtgtcatacaccatcaatttaggaagtattgaagaagcaatgctaattac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggtgtaatacaccatcaatttaggaagtattgaagaagcaatgctaattac 264

                                                                       
Query: 65  agtgtgaactttaggaactcttgttgacagtaagggccctgcaataaaattaggaatgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgtgaactttaggaactcttgttgacagtaagggccctgcaataaaattaggaatgac 324

                                                                       
Query: 125 acagggtaactaattggtgattcacagtgcaatgtgaaaagctagaggaccccttagcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagggtaactaattggtgattcacagtgcaatgtgaaaagctagaggaccccttagcac 384

                                                                       
Query: 185 agggagaaaccttccagcaatgagatcagaacacagaggaatctggagtcaccttttgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggagaaaccttccagcaatgagatcagaacacagaggaatctggagtcaccttttgaa 444

                                                                       
Query: 245 agtaaaagtagctgaattctaaagcggttacatctttagactcctttaggcctgatgatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtaaaagtagctgaattctaaagcggttacatctttagactcctttaggcctgatgatc 504

                                                                       
Query: 305 tcaaattgcctcattctccaaggctataaaagtggcccaattctggtgctggaaagatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaaattgcctcattctccaaggctataaaagtggcccaattctggtgctggaaagatgg 564

                                                                       
Query: 365 ctgaccccttaagggtaattaactgttcttctagagaatgcaggttcttctagcactcac 424
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgagtccttaagggtaattaactgttcttctagagaatgcaggttcttctagcactcac 624

                                                                       
Query: 425 atggcagttaaaacagtctataactccaagtctaggggatcagacacttagacagataca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atggcagttaaaacagtctataactccaagtctaggggatcagacacttagacagataca 684

                                                                       
Query: 485 catgtgggcaaaacaccaacatacagaaaataaagataagcaaatcataaaatatggcac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catgtgggcaaaacaccaacatacagaaaataaagataagcaaatcataaaatatggcac 744

                                           
Query: 545 aattaattttgggtggtggtggttttgttttg 576
           |||||||||||| |||||||||||||||||||
Sbjct: 745 aattaattttgg-tggtggtggttttgttttg 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space:   546190
Effective search space used:   546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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