BAC Information

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BAC

Clone NameMSMg01-111A03
Chromosome10 (Build37)
Map Location 26,771,215 - 26,771,908
singlet/doubletsinglet
Overlap geneLama2
Upstream geneC030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111A03.T7 (MSMg01no111_a03.b1)MSMg01-111A03.TJ (MSMg01no111_a03.g1)
ACCAG323786AG323787
length1,1511,143
length of high quality
(start - end)
745 (73 - 817)694 (118 - 811)
definitionCHROMAT_FILE: MSMg01no111_a03.b1 PHD_FILE: MSMg01no111_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:47 2005CHROMAT_FILE: MSMg01no111_a03.g1 PHD_FILE: MSMg01no111_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGACATTCGCGCTAACNATCCTAAGGGAGAGGATCCGCGGAATTCCTG
ATCTTTCCAGAACCCTTAAATGAATGGGTGTTGGATCTTGTCAAATGCTT
TTCCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTT
ATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCAT
CCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTT
CTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTC
ATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGG
TTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGTGTAGAGTAC
CTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAGATCT
TCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCT
TTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGGGATA
TGGGACTGTTTAGAGGGTCAACTTGATCCTGATTCAACTTTGGTACCTGG
TATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGA
GTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCAGGAT
CTGTTGTTATGTCTCCCTTTTCAGTTCTGATTTTGTTAATTAGGATTTTG
TCTCTGTGCCCTCTAGTGAGTCTAGCTAAGGGTTTATCTATCTTGTTGAT
TTTCTCAAAGAACCAACTCCTGTTTGGTTAATTCTTTGAATAGTTCTTCT
TGTTTCCACTTTGGTGATTTCACCCCTGAGTTTGATTATTTCCTGCCCGT
CTACTCCTCTTGGGGGAATTTGCTTTCTTTTTTTTCTAAAGCTTTTTAAA
TGTGTTGTCCAAGCTGTCTAGTATGTGCTTCTCTCCCCGTTTCTTCCTTG
GGAGGCACTTCAAAACCTTTTAAGTTTTTCCCCTCTTTAAAAAAAGCCTT
TTCCATTGGGGTCCCCCACAAAGGTTTGTGGGAAACCCTTTTGGGGCACC
TTCTCCTTTTTCTCTTTAAACTCCTCTTATAAAAGTTCTCTTTATATTTT
T
CCCNACCGACGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTTAAAGGCCTCCCTGGACATGAACTATTGTTCT
GTTTCCTTTTGGTTTTATCTGAGCTAGGGCAGAACCCAGGACCCAGTGCT
TGACAGAGAAGAGCTTAACTACTAAGCTCAGTCGTGGGTCTTAAACACCA
GCATCTTTAAACTATACTGTGAGATAGGTAGCTTGGATTTATGCTCATTA
ATGTGGATTGTATTTTTGGTGGAATTTAAAAAGAATGTACAACTACTGCT
AATATTTGCAGAGTTACTAGATCAAGGCTCTAGCTGTATAGGGAGCATGT
CATTGGTACCTCTTGTTTTCTGCACTTGTCCAGTGTTCTCTTTCTTCTAC
CCCTCGGGCGTTATTATTCTACAAGTTATTCTAGAATTAATGGACCTCTA
CAGATAGATTCATACAAAGAAAATGAGGAGTTAAACCAAGATTACTAAGG
CTATGGTAAATATTAGACCCACTTCTCCTAAGTCTCCTGTAAGCCTTTTC
AATTGCTTCAAAATGGAAATAAGTGAAGGTTTGCCCTCTGTCCTTTGCCC
CTACTGTCCAAAGCCATTTAAACCCTGTGGAAATCATCTTTCTGTGACTC
TGAGACCTGAGTCATCTCTGATCCTGGGTTTGAGGCTTCTTGTACAGTAG
TCTTTGAAAGTGTTCTCATTTTTGCTCCCTAATTGTATGACTGAATAGAC
TTTCAAATAGCTTCTCCAGCTAGAGTTTGATAAATGGAGGTTTCTTCTGG
AATATTATCGCCTGCATGTTGTAAGCTTTAGAATGTAGTAGCATAGACTT
TTCCTAAGGACTCCTCTTCTCCGTTATATTTTCCCCTTTATATAGTTCCT
TTAGGAACCACCCAATTGTGCTTTCGTTTTCTTGAATACCCCCCCAGTTA
TCCGTTTTTCGGAATTCTAACTTGTTAGTTGGCTCCGCTTTGCTTTCCTG
GCCAATTTAATTTTCCCTTGCCCCTCCCCCAATGGTCTTCAAAAGCTGTG
GTTTCTTCCAGGGCGGTCTTATAGGGCCGGGTAATATTCCTCTCGGGAAA
TAATTTTCTCCCACAAGGGGCCAAGCTTTCCAATTTTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_a03.g1 MSMg01no111_a03.g1 CHROMAT_FILE:
MSMg01no111_a03.g1 PHD_FILE: MSMg01no111_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:47 2005
         (694 letters)



>mm_chr10_26771015_26772108
          Length = 1094

 Score = 1326 bits (686), Expect = 0.0
 Identities = 692/694 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagctagggcagaacccaggacccagtgcttgacagagaagagcttaactactaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagctagggcagaacccaggacccagtgcttgacagagaagagcttaactactaagc 260

                                                                       
Query: 61  tcagtcgtgggtcttaaacaccagcatctttaaactatactgtgagataggtagcttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtcgtgggtcttaaacaccagcatctttaaactatactgtgagataggtagcttgga 320

                                                                       
Query: 121 tttatgctcattaatgtggattgtatttttggtggaatttaaaaagaatgtacaactact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatgctcattaatgtggattgtatttttggtggaatttaaaaagaatgtacaactact 380

                                                                       
Query: 181 gctaatatttgcagagttactagatcaaggctctagctgtatagggagcatgtcattggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaatatttgcagagttactagatcaaggctctagctgtatagggagcatgtcattggt 440

                                                                       
Query: 241 acctcttgttttctgcacttgtccagtgttctctttcttctacccctcgggcgttattat 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 acctcttgttttctgcacttgtccagtgttccctttcttctacccctcgggcgttattat 500

                                                                       
Query: 301 tctacaagttattctagaattaatggacctctacagatagattcatacaaagaaaatgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctacaagttattctagaattaatggacctctacagatagattcatacaaagaaaatgag 560

                                                                       
Query: 361 gagttaaaccaagattactaaggctatggtaaatattagacccacttctcctaagtctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagttaaaccaagattactaaggctatggtaaatattagacccacttctcctaagtctcc 620

                                                                       
Query: 421 tgtaagccttttcaattgcttcaaaatggaaataagtgaaggtttgccctctgtcctttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtaagccttttcaattgcttcaaaatggaaataagtgaaggtttgccctctgtcctttg 680

                                                                       
Query: 481 cccctactgtccaaagccatttaaaccctgtggaaatcatctttctgtgactctgagacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccctactgtccaaagccatttaaaccctgtggaaatcatctttctgtgactctgagacc 740

                                                                       
Query: 541 tgagtcatctctgatcctgggtttgaggcttcttgtacagtagtctttgaaagtgttctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagtcatctctgatcctgggtttgaggcttcttgtacagtagtctttgaaagtgttctc 800

                                                                       
Query: 601 atttttgctccctaattgtatgactgaatagactttcaaatagcttctccagctagagtt 660
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 801 atttttgctccctaattgtatgactgaatagactttaaaatagcttctccagctagagtt 860

                                             
Query: 661 tgataaatggaggtttcttctggaatattatcgc 694
           ||||||||||||||||||||||||||||||||||
Sbjct: 861 tgataaatggaggtttcttctggaatattatcgc 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)