Query= MSMg01no111_j20.b1 MSMg01no111_j20.b1 CHROMAT_FILE:
MSMg01no111_j20.b1 PHD_FILE: MSMg01no111_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:10 2005
(740 letters)
>mm_chr10_90263911_90265057
Length = 1147
Score = 1265 bits (654), Expect = 0.0
Identities = 710/732 (96%), Gaps = 9/732 (1%)
Strand = Plus / Plus
Query: 1 gaggcagaaagagttaaccctgtaaaagacatagaggagagagaagtgggggcataacaa 60
||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct: 201 gaggcagaaagggttaaccctgtaaaagagagagaggagagagaggtgggggcataacaa 260
Query: 61 aatatgagcattttaaagtcgcacaaagatgcctctggggctgtggtagtattaaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatgagcattttaaagtcgcacaaagatgcctctggggctgtggtagtattaaatatt 320
Query: 121 aacgtcacacaataaaattacagaaaattctaaataatgaaaaatatcactctgaagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgtcacacaataaaattacagaaaattctaaataatgaaaaatatcactctgaagcag 380
Query: 181 agctgccacttgagggtgagatgggcacagagcaatcgcagcatgatccaggatgtgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgccacttgagggtgagatgggcacagagcaatcgcagcatgatccaggatgtgtgt 440
Query: 241 gaggcgcgagggctaactcaatcatggcctccgtgttgctactgtgaagtaatgaaagtt 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggcgcgagggctaactcaatcatagcctccgtgttgctactgtgaagtaatgaaagtt 500
Query: 301 gtaagagtgacagctctcacgctgcttgaggtcacaggaggaaaatatttctgtgctgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaagagtgacagctctcacgctgcttgaggtcacaggaggaaaatatttctgtgctgta 560
Query: 361 catgtgttttcctttaagatctgcctggaatggactttaaaggttagcaagggctgtgta 420
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 561 catgtgttttcctttaagatctgccttgaatggactttaaaagttagcaagggctgtgta 620
Query: 421 atttattaaaattcaagactcacaacaatgtagaaagcaggaccttttcttagtgccccc 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 atttattaaaattcaagactcacaacaatgtagaaagcaggatcttttcttagtgccccc 680
Query: 481 aaattccttcaagttaatcctgatagagatggattccatcttcatttatgatagcttcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattccttcaagttaatcctgatagagatggattccatcttcatttatgatagcttcct 740
Query: 541 ttcaaatgatttc-tatggaggacacatacattataaa---tcaaagcatggca----aa 592
||||||||||||| | |||||||||||||||||||||| | ||||||||||| ||
Sbjct: 741 ttcaaatgatttcct-tggaggacacatacattataaaaaataaaagcatggcaggcaaa 799
Query: 593 gcagacaaacgtcaaagcagcggccatctagggaccccttagctccttgttcatcccttc 652
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gcaggcaaacgtcaaagcagcggccatctagggaccccttagctccttgttcatcccttc 859
Query: 653 taccctttatacagagacaggcatgtgggtgggtggggccccttacataactaaatgcct 712
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 860 taccctttatacagagacagggatgtgggtgggtgggaccccttacataactaaatgcct 919
Query: 713 gcccaaaggatc 724
||| ||||||||
Sbjct: 920 gccaaaaggatc 931
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1147
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1137
Effective search space: 830010
Effective search space used: 830010
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_j20.g1 MSMg01no111_j20.g1 CHROMAT_FILE:
MSMg01no111_j20.g1 PHD_FILE: MSMg01no111_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:10 2005
(275 letters)
>mm_chr10_90406582_90407255
Length = 674
Score = 497 bits (257), Expect = e-145
Identities = 269/273 (98%), Gaps = 3/273 (1%)
Strand = Plus / Minus
Query: 1 ccaaggccatatgtcccagtgggggacaatccaagggatatagaaagcagcaagtgagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ccaaggccatatgtcccagtgggggacaatccaagggatatagaaagcagcaagtgagtt 412
Query: 61 caccttttctcccttctggcacattcttcaagccttctgaggctggccctcagcctcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 caccttttctcccttctggcacattcttcaagccttctgaggctggccctcagcctcact 352
Query: 121 catgctcttcagatctcagtggagccttagacttggttttggtttttttttttttttttt 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 351 catgctcttcagatctcagtggagccttagacttggttttgg-ttttttttttttttttt 293
Query: 181 ctgtctctttgaccaatctctacttcagtttctcacacagcaa-tggtaagactatcccc 239
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 292 ctgtctctttgaccaatctctacttcagtttctcacacagcaact-gtaagactatcccc 234
Query: 240 ttgagacacccagtctcctccaacattgtcatg 272
|| ||||||||||||||||||||||||||||||
Sbjct: 233 ttaagacacccagtctcctccaacattgtcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 674
Length adjustment: 9
Effective length of query: 266
Effective length of database: 665
Effective search space: 176890
Effective search space used: 176890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
