BAC Information

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BAC

Clone NameMSMg01-112E17
Chromosome10 (Build37)
Map Location 121,661,384 - 121,846,001
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275
Downstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112E17.T7 (MSMg01no112_e17.b1)MSMg01-112E17.TJ (MSMg01no112_e17.g1)
ACCAG324742AG324743
length743709
length of high quality
(start - end)
323 (46 - 368)195 (104 - 298)
definitionCHROMAT_FILE: MSMg01no112_e17.b1 PHD_FILE: MSMg01no112_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:25 2005CHROMAT_FILE: MSMg01no112_e17.g1 PHD_FILE: MSMg01no112_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,845,684 - 121,846,001)(121,661,384 - 121,661,578)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGATAGCATTGCCAGAGATCCTATCACACAGTTGTGGAAATATGA
CTGCATGACCAGAGAAGGCCTAAGCTGAATGGGCTGGAAGCCAAGAAGTC
ATAAAACTGGCAAATGATTTCTCAACAGTCCACACTGAATATGCAAAGTA
ATTTTTAGGAAGGTCACCATATGGCCTTCAGTTATTTGAAAACCCTCTCA
GCCTAAATTTTCAGTATGTTCAAATATCGTGCCAAGCATTCAGTGGCTAA
GTCAATCATACTTGTGTGAAACACTTGAAGAAATGGCAGATTTCTTTCCC
TCTATACATTTTCTTCTCAACTTACAACATAATGAATTTTGATTCAGACC
TGGAGGACCATTTCCAGCCAAACCCAGTAGGATAACACTTGCTAGGATTA
GAATCGTGACTCTCAACAGAAATGTATTCTTTTCGTGCCCCAGTCTAGAA
GAGCCTAGGGAACAGGCCTTTGTTCAGAACACCCTCAAATGGACACTCAC
TCGGTGGCCATACAAGCACAGTACTCGAGTAACACAGAGCAATAGAACTG
TTAAATACCCAGTACTGTAACAGCCAGAAAAATCTCATAATCCTAGGCTT
CCATTTACTCTAATGAAGAAAAAAATTATACCCTGAATGAAAGATCTTGT
CGACCAAGCTTGTTTTTCTTCCCATGGCCTTTCCTCACCCTGA
CTGGCGGCGCCTGGTTTCGAATTGGGGTGAACTATAGAAGGTTTCAAAAA
ATCGATCAGGGCACTGTACAGATTCCACAGATGGGCACCCCAGAGGTGGC
CAGTCTCAAGCATGCTCTGTTCAAGATGTGTGAGCATGTTTGGTTTAAAG
TTAACTGTGGCTCAATAAGGAAACAGGGAGAACATACTTCTACTTGACTC
GGGGCCACGGGCACTTGTTCAGAAGGTTAATATGTTACATAGGAAGTCAA
GCCCAGATTCTTCATTGAAAAATATTTTATATGGTTCCTGAGGGATGGTT
CTACTTGCAAAGGCACTTTTTGCCAAGCCAGGAGACACATGTTTGTTCTC
CCAGATCCGCATGATGTAAGGAAAGAGCTGACTCCTGAAGTTAGCCTGTG
ACTTCCACATGTGTTCCATGTCCTGAGTGTCCCTCTCCTTAAGTCACTGC
AAAACCATTATAACAAGTTGGAATTGAAGGCTAGGTATGGTGATGTATGC
CTGAACTCCTAGCACAGAGGATTGGCCATTAGTTCAAGGCCAGTTTGTAC
TACAGCACTATTTTTTCTTTTGCAAAGGCTTCTTGCATGGCAAACCTAGG
CACTGGAGCAGCACTAAAGCAGGATAATCACATCCCATCTTGTATTCATT
CCCTTCCTCAGTCCAGGGTCTTTAGTTCAGAATCCCCCATATAATATGAC
ACTTGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_e17.b1 MSMg01no112_e17.b1 CHROMAT_FILE:
MSMg01no112_e17.b1 PHD_FILE: MSMg01no112_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:25 2005
         (323 letters)



>mm_chr10_121845481_121846203
          Length = 723

 Score =  592 bits (306), Expect = e-173
 Identities = 315/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagatagcattgccagagatcctatcacacagttgtggaaatatgactgcatga 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggaattcagatagcactggcagagatcctatcacacagttgtggaaatatgactgcatga 462

                                                                       
Query: 64  ccagagaaggcctaagctgaatgggctggaagccaagaagtcataaaactggcaaatgat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ccagagaaggcctaagctgaatgggctggaagccaagaagtcataaaactggcaaatgat 402

                                                                       
Query: 124 ttctcaacagtccacactgaatatgcaaagtaatttttaggaaggtcaccatatggcctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttctcaacagtccacactgaatatgcaaagtaatttttaggaaggtcaccatatggcctt 342

                                                                       
Query: 184 cagttatttgaaaaccctctcagcctaaattttcagtatgttcaaatatcgtgccaagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cagttatttgaaaaccctctcagcctaaattttcagtatgttcaaatatcgtgccaagca 282

                                                                       
Query: 244 ttcagtggctaagtcaatcatacttgtgtgaaacacttgaagaaatggcagatttctttc 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 281 ttcagtggctaagtcaatcatacttgtatgaaacacttgaagaaatggcagatttctttc 222

                             
Query: 304 cctctatacattttcttc 321
           ||||||||||||||||||
Sbjct: 221 cctctatacattttcttc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_e17.g1 MSMg01no112_e17.g1 CHROMAT_FILE:
MSMg01no112_e17.g1 PHD_FILE: MSMg01no112_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:25 2005
         (195 letters)



>mm_chr10_121661184_121661778
          Length = 595

 Score =  339 bits (175), Expect = 9e-98
 Identities = 190/195 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcaagcatgctctgttcaagatgtgtgagcatgtttggtttaaagttaactgtggctc 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tctcaagcatgctctgttcaagatgtgtgagcatgcttggtttaaagttaactgtggctc 260

                                                                       
Query: 61  aataaggaaacagggagaacatacttctacttgactcggggccacgggcacttgttcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaggaaacagggagaacatacttctacttgactcggggccacgggcacttgttcaga 320

                                                                       
Query: 121 aggttaatatgttacataggaagtcaagcccagattcttcattgaaaaatattttatatg 180
           |||||||||||  | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 aggttaatatggcagataggaagtcaagcccagattcttcattgaaaaatgttttatatg 380

                          
Query: 181 gttcctgagggatgg 195
           |||||||||||||||
Sbjct: 381 gttcctgagggatgg 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)