BAC Information

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BAC

Clone NameMSMg01-112O06
Chromosome10 (Build37)
Map Location 110,484,349 - 110,615,017
singlet/doubletdoublet
Overlap geneEG432502, LOC667904, Osbpl8
Upstream geneLOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17
Downstream geneBbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112O06.T7 (MSMg01no112_o06.b1)MSMg01-112O06.TJ (MSMg01no112_o06.g1)
ACCAG325182AG325183
length708714
length of high quality
(start - end)
218 (35 - 252)227 (58 - 284)
definitionCHROMAT_FILE: MSMg01no112_o06.b1 PHD_FILE: MSMg01no112_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:10 2005CHROMAT_FILE: MSMg01no112_o06.g1 PHD_FILE: MSMg01no112_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,484,349 - 110,484,561)(110,614,791 - 110,615,017)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGAATTCATCAT
GCTTCCCCGTTAAACAGGATAGAGAGATATTATATACTTAGCATCTTTAT
ATTTCCACTAAAGGTTGGTTACTTGTTAAATAATTTATATATTAATCCAT
AATACTATCTCTCTAAATCAATCATTTTTGCTTGGAAATTCCCCATGAGT
CATTGCACAAATTACTTCTTGACCATGCTGTGTGCCAAGTTCCTTTCCAG
GCAGTGGGAACACATAGCCTACCGCACAGCAGGTGAGATCTCTGTTGTGT
TGCACTGGTACTTGTTGGCCCAACATAGATAGCAAATGACGGGACGTAGT
CTAAAATAATGCAGCTCCAGAACTTTCTAACTCTAATAAAATAAGTAAAA
AAAATGCCTACACGGATGGAGGAGGGAAAGACTTTAACCTGCGAGGGATT
CATACGCCGATCTAGATGCATTTTCTTCCACACAAGTTCGGCATATACCA
GAACCCTGGTGTAAGAATATTTTGCTTCTATCACAATCACATACTACCAT
GGAATATCGAAATGCACAATATAAGACTCTAAGATGTCTTTCTGCCCCCT
CGCCACGTGCTCTTATTTGTAATTCGAACAATACCTACTATATTCTATGA
TAGACTGCCCGTATCTACCGACCATTCGATACAGAGCTCGATTCTCCTTT
ACATATGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTCACTAACTTCTTTCTCCAAAGTACAGTGCCAGATCAGCAC
AGCATCAACCGAAACAGGAAACAGAACCAACAATGCAATCTCAGGTTAGA
ATTCCAATTAATGTGGCAGAATTTATATTATCCATATAGAGGTTCTCAAG
CCAGGCATGGGGACACAGGCCTGTAACTGGTCATCTCAGCACCTAGGAAG
TGGAGACAGGAAAACCAGGAGTTCAAGGCTATAGAACTAACTTGAGACAA
GCCACGTTTGTCATTGGGAACATGAACATGGGACCATGCTCACAAGACAA
GAGAAAAACACCAAGTCCCGTCCTTGCATAGTAGCTAAGTTTTTGTTGTT
TTGCTCTCTGAGACAGGGTTCTCTGCAACCAGTTTGGCCACAGTGTCTCC
TGACACTCTTCTCTCCACTCCTGAATGCTCTATTACAGGTTATATCCATC
CGCGCCCAGTCCCGTCTTCTAGTTCTAGAGACTATCTCAAGCTGGTACCT
ATCCTTTGCTATTCCGAATCTTATACTTTTCCCCTCATCTAGCGAGTCGA
GAATGTTTTTCTCCTTCTAGTCACTTGTCTATGTTTAGTTACCCCCTGAC
GTCTACCCGCTTTTGTTTCCCCACTTATCCCCGCGTTCCGTTGTTCCCGT
TCTTTAAACCGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_o06.b1 MSMg01no112_o06.b1 CHROMAT_FILE:
MSMg01no112_o06.b1 PHD_FILE: MSMg01no112_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:10 2005
         (218 letters)



>mm_chr10_110484144_110484761
          Length = 618

 Score =  373 bits (193), Expect = e-108
 Identities = 208/213 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcatcatgcttccccgttaaacaggatagagagatattatatacttagcatcttta 65
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 206 gaattcatcatgctaagccgttaaacaggatagagagatattatatacttagcattttta 265

                                                                       
Query: 66  tatttccactaaaggttggttacttgttaaataatttatatattaatccataatactatc 125
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatttccactaaagggtggttacttgttaaataatttatatattaatccataatactatc 325

                                                                       
Query: 126 tctctaaatcaatcatttttgcttggaaattccccatgagtcattgcacaaattacttct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tctctaaatcaatcatttttgcttggaaattccccatgagtcattgcacaaattacttct 385

                                            
Query: 186 tgaccatgctgtgtgccaagttcctttccaggc 218
           |||||||||||||||||||||||||||||||||
Sbjct: 386 tgaccatgctgtgtgccaagttcctttccaggc 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no112_o06.g1 MSMg01no112_o06.g1 CHROMAT_FILE:
MSMg01no112_o06.g1 PHD_FILE: MSMg01no112_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:10 2005
         (227 letters)



>mm_chr10_110614678_110615304
          Length = 627

 Score =  424 bits (219), Expect = e-123
 Identities = 225/227 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcactaacttctttctccaaagtacagtgccagatcagcacagcatcaaccgaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 attcactaacttctttctccaaagtacagtgccagatcagcacagcatcaaccgaaacag 281

                                                                       
Query: 61  gaaacagaaccaacaatgcaatctcaggttagaattccaattaatgtggcagaatttata 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 280 gaaacagaaccaacaatgcaatctcaggttagaattctaattaatgtggcagaatttata 221

                                                                       
Query: 121 ttatccatatagaggttctcaagccaggcatggggacacaggcctgtaactggtcatctc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttatccatagagaggttctcaagccaggcatggggacacaggcctgtaactggtcatctc 161

                                                          
Query: 181 agcacctaggaagtggagacaggaaaaccaggagttcaaggctatag 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 agcacctaggaagtggagacaggaaaaccaggagttcaaggctatag 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)