BAC Information

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BAC

Clone NameMSMg01-113G12
Chromosome10 (Build37)
Map Location 102,863,821 - 102,864,204
singlet/doubletsinglet
Overlap geneSlc6a15
Upstream geneLOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik
Downstream geneEG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113G12.T7 (MSMg01no113_g12.b1)MSMg01-113G12.TJ (MSMg01no113_g12.g1)
ACCAG325552AG325553
length705759
length of high quality
(start - end)
392 (38 - 429)---
definitionCHROMAT_FILE: MSMg01no113_g12.b1 PHD_FILE: MSMg01no113_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:49 2005CHROMAT_FILE: MSMg01no113_g12.g1 PHD_FILE: MSMg01no113_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTAAACGACTCCTATATCCAGAGGATCCGCGGAATT
CTTTGTCAGCTCGCCTTGTTAGGAGGTAAAAGAAGCTGTGTTCTTTGCAT
GTCTGGCTCTGAGTTTGTATTCATTTTGTAGGAGCAAAAATGCTGATGTG
GGCGTCTGGTTTTCTTCTGTAGTTCAAAAGTGCTCTTTAATATTTGGAGC
CCTTGAGAACTTCCAGTGAACACCGCTTTAAATTCATAAATTTCAGCCAC
CTTAGAATTATTAAAATCCGCTTCGGGCCTTACATACTTAATAACCCAAA
CTATTTATATTCAGAGCATTGAAGAAAATGTTTCCTGAGATCAGTGCAAC
TCATTCTTCTGAGTAAACTTCTGAAAACTACTTTCTAAGCCCACAGCTGG
TTATCACAGTTCCGCACCTTGGTTTTAGTATGTGCTTTAGAACAGATATG
ACCTTTGGGTGGATCTAGTACTTAAAATTTCAGTATAAGTCAGCATTTTT
AGTTTGGGCTAAAGATCGGTGGTAAAATTCAAGATTCTACACTGCAATAA
GGTAAAAATAAAAACAANCTGGCGTTTAACGCGTAGGAAAAGTGTAAAAA
TGGAAAATAGAAAAAGGGGGGGCAGGGTGTGGGTTGGGTGACAAACAAAA
AAATAATTATTCGTCACGGAAAGGCGGTGGAAAAAATCCGCCCGGGGAAA
AAACG
GGTGACCCCGCTGCACTCCGCCGGTGCTTTTGTATTTTGCTATTTTTGAC
ATGGGTTGTGTACATGGGGGTGTAGGTTAATTTTAACACATGGGGACATT
GGTGACACTGGTTTTCACTGTACCTTGTACATTGGGCCAACTGGGTAAAA
TGACAAAATGTGGAACTGAACAACCACCTTTTGGTGACAAGGACAAGGGG
ACAGGGGCCCACGGGGTGTGGGCCACCCTGTCCCCCTTCCTATGTTCTTG
GGTGTAACTTAACTACATGGACAAATGTCCCGTTCACTGGTCCTTGGTGC
TCCGTGCGGATGTTGTGTTGTATTTCTCTGCGTTCCCGTTTCCTGGCGTC
TTGTGGCGATGGGTTGATTCTGTGTGTGGTTTTTCACCATTTGTTTGTGC
CTTTGTTTTGGGGGTGTCAAGGGTGGAACAAAGGGATGACATGATATTTG
GGGACCAACAAGGTGACCACACTGTGTTACCCCACTGTATTACACAATGG
GACACCATTCGGGAATTATTTTAATTATTTTGCCCAACGTGGCAAGGGGA
TCTGTTACAAAATGACACCCATGGGTTAACAACTAATGTATAAACGGGCA
AATTGGCGTACCAACGGGGGTTTTTGGGTAATTGGAAACATTTGGAAAAA
AAGGGGGGGGGGGTGTGTGGCAACTATTGTACTTCTCTTTTTTTCTTTCT
GCTTCCTTCTTTTGGTCCTTTGGGGAAATTTTGTGTGGGGGGGAAAAATA
TGGGTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_g12.b1 MSMg01no113_g12.b1 CHROMAT_FILE:
MSMg01no113_g12.b1 PHD_FILE: MSMg01no113_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:49 2005
         (392 letters)



>mm_chr10_102863614_102864404
          Length = 791

 Score =  683 bits (353), Expect = 0.0
 Identities = 377/385 (97%), Gaps = 1/385 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattctttgtcagctcgccttgttaggaggtaaaagaagctgtgttctttgcatgtct 67
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 208 ggaattctttgtcagct-gccttgttaggaggtaaaagaagctgtgttctttgcatttct 266

                                                                       
Query: 68  ggctctgagtttgtattcattttgtaggagcaaaaatgctgatgtgggcgtctggttttc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggctctgagtttgtattcattttgtaggagcaaaaatgctgatgtgggcgtctggttttc 326

                                                                       
Query: 128 ttctgtagttcaaaagtgctctttaatatttggagcccttgagaacttccagtgaacacc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttctgtagttcaaaagtgctctttaatatttggagcccttgagaacttccagtgaacacc 386

                                                                       
Query: 188 gctttaaattcataaatttcagccaccttagaattattaaaatccgcttcgggccttaca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 387 gctttaaattcataaatttcagccaccttagaattattaaaatccgcttcaagccttaca 446

                                                                       
Query: 248 tacttaataacccaaactatttatattcagagcattgaagaaaatgtttcctgagatcag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 447 tacttaataacccaaactatttatattcagagcattgaagaaaatgtttcctgggttcag 506

                                                                       
Query: 308 tgcaactcattcttctgagtaaacttctgaaaactactttctaagcccacagctggttat 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgcaactcattcttctgagtaaacttctgaaaactactttctaagcccacagctggttat 566

                                    
Query: 368 cacagttccgcaccttggttttagt 392
           ||||||||||||  |||||||||||
Sbjct: 567 cacagttccgcagtttggttttagt 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 791
Length adjustment: 9
Effective length of query: 383
Effective length of database: 782
Effective search space:   299506
Effective search space used:   299506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)