BAC Information

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BAC

Clone NameMSMg01-113H12
Chromosome10 (Build37)
Map Location 93,988,363 - 94,024,456
singlet/doubletdoublet
Overlap geneTmcc3
Upstream geneAmdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
Downstream geneEG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113H12.T7 (MSMg01no113_h12.b1)MSMg01-113H12.TJ (MSMg01no113_h12.g1)
ACCAG325597AG325598
length687699
length of high quality
(start - end)
421 (70 - 490)129 (72 - 200)
definitionCHROMAT_FILE: MSMg01no113_h12.b1 PHD_FILE: MSMg01no113_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:54 2005CHROMAT_FILE: MSMg01no113_h12.g1 PHD_FILE: MSMg01no113_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,988,363 - 93,988,783)(94,024,331 - 94,024,456)
sequence
TGGTCATAATTTGCGGCGCTAAACGACTCCTATATCGAGAGATCCGCGGA
ATTCGAACATTAACGAAAGACTAATCTCAGAGCAGCTGGTCCCACATCCT
GTCCTGAAATACTTAGTGGACATATTGGACTAGAAGGTGCTCAGAAGCAT
ATCTTCCCAACTTTGCCCAGTAAGAAACTCAAGTCCAAATCTCAGTGGAA
CTGAGTAAGATATTCAATTCCTCTTTTAATTTTTTCTGTTTGTTTTGTCC
CCCCTCCCCCCAGCCTTGTTTTGATTGTGTGCTTTTTTGCATACATTTGT
TTGTATTATGCACAGAGACCATCAATTGTTCAGTAAGTTGTTGTTGGTTT
GGTTTGGTTTTTGACTTTACCGTGGATGGGAAGCATAGTCAAATAACCTG
GTTCCGGTTTCTCTTTCAGTACAGTATCCAGGAGACTACAGGAGCCATTC
CGTTTATAGCACGGGCTTTGAGAGGTCAGTTTCATTTACCGTAGGCGACT
CTGAATGTCGAGAGCACGTTCAAGGTAGCCAAGGCTAAGCTCTTAAGTTT
GGTACATTCGATGCATTTCTACTGTTGTTAGTAGCTTAGTTTTTAGACTA
CACTGGGGTGACCTGGAGGGAACCTGAGGTACGTAGTTGGTGGATTGCCA
ACTCTGCGGACGTTGTGGGGAAAAATGCCACCATCCT
GATGAAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTAAGTTAGTTCACGAATGGACCCACCC
AAAGTCAGATGTTCTATTTGAAAAGTGCCCTCCTGTCCCCATCTGCTTAA
TTAGCCTGGCGGTACTACAAGCATTGGAGTCAGAGAGCGACCGTGATGGG
CTCAGGCCTGAGAGTGTCCACTGTTTGGGTGGAACGGAACAAGAATTATG
TGTGAAAAAAAAAAATGCAGGAAGTGATACAGAAGGTGAAACAGAGAAAA
AGCTGTAAGCAAGCTTGATGATTCCCAAGGTTTCTGGGAAGGAGACACAT
GACCCAAAACCAGCTGAGGATTGAAAAATTGGCAGGATGACTGTGGGCGT
TGATAACTGTTATCCTAACGCTTTGTAGGATGAGGGAAAAGGATGGACGT
AAGGTTGAGATTGTTTGATTGTTTCACGACTGAAAGGAAGACAATAAAGC
CAGCTAGGATAACCTACCTATGCGAACGGTACATGTGCGAGGGACACCAC
AAGAGGCAACGTTTAGGGGATTACAGGGTACTGGAGATATGGGAAAAAAA
GAAAACAAAAAGAGTGGTTCTATGGATAGAAATGAAAGATGAGGCAAAAA
GGGGGAGAAATAATTGGGTATAATACGAGGGTGAAAACAACAGTGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_h12.b1 MSMg01no113_h12.b1 CHROMAT_FILE:
MSMg01no113_h12.b1 PHD_FILE: MSMg01no113_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:54 2005
         (421 letters)



>mm_chr10_93988163_93988983
          Length = 821

 Score =  745 bits (385), Expect = 0.0
 Identities = 412/421 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaatctcagagcagctggtcccacatcctgtcctgaaatacttagtggacatattgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaatctcagagcagctggtcccacatcctgtcctgaaatacttagtggacatattgga 260

                                                                       
Query: 61  ctagaaggtgctcagaagcatatcttcccaactttgcccagtaagaaactcaagtccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctagaaggtgctcagaagcatatcttcccaactttgcccagtaagaaactcaaatccaaa 320

                                                                       
Query: 121 tctcagtggaactgagtaagatattcaattcctcttttaattttttctgtttgttttgtc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tctcagtggaactgagtaagatattcgattcctcttttaattttttctgtttgttttgtc 380

                                                                       
Query: 181 ccccctccccccagccttgttttgattgtgtgcttttttgcatacatttgtttgtattat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ccccctccccccagccttgttttgattgtgtgcttttttgcatacatttgtttgcattat 440

                                                                       
Query: 241 gcacagagaccatcaattgttcagtaagttgttgttggtttggtttggtttttgacttta 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacagagaccatcaatcgttcagtaagttgttgttggtttggtttggtttttgacttta 500

                                                                       
Query: 301 ccgtggatgggaagcatagtcaaataacctggttccggtttctctttcagtacagtatcc 360
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ccgtggttgggaagcatagtcaaataacctggttccagtttctctttcagtacagtatcc 560

                                                                       
Query: 361 aggagactacaggagccattccgtttatagcacgggctttgagaggtcagtttcatttac 420
           ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 aggagactacacgagccattctgtttatagcacgggctttgtgaggtcagtttcatttac 620

            
Query: 421 c 421
           |
Sbjct: 621 c 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no113_h12.g1 MSMg01no113_h12.g1 CHROMAT_FILE:
MSMg01no113_h12.g1 PHD_FILE: MSMg01no113_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:54 2005
         (129 letters)



>mm_chr10_94024131_94024659
          Length = 529

 Score =  213 bits (110), Expect = 4e-60
 Identities = 122/126 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaagttagttcacgaatggacccacccaaagtcagatgttctatttgaaaagtgccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attaagttagttcacgaatggacccacccaaagtcagatgttctatttgaaaagtgccct 267

                                                                       
Query: 61  cctgtccccatctgcttaattagcctggcggtactacaagcattggagtcagagagcgac 120
           ||||| |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 266 cctgttcccatctgcttagttagcctggcggtactacaagcactggagtcagaaagcgac 207

                 
Query: 121 cgtgat 126
           ||||||
Sbjct: 206 cgtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)