BAC Information

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BAC

Clone NameMSMg01-113O11
Chromosome10 (Build37)
Map Location 19,286,092 - 19,286,275
singlet/doubletsinglet
Overlap genenone
Upstream geneD10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
Downstream geneIfngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113O11.T7 (MSMg01no113_o11.b1)MSMg01-113O11.TJ (MSMg01no113_o11.g1)
ACCAG325919AG325920
length706692
length of high quality
(start - end)
184 (109 - 292)58 (188 - 245)
definitionCHROMAT_FILE: MSMg01no113_o11.b1 PHD_FILE: MSMg01no113_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:28 2005CHROMAT_FILE: MSMg01no113_o11.g1 PHD_FILE: MSMg01no113_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGACAAGGCGCG
GAATTCAGTTGTTTCTCAGAATTTAGAGTAGTATAAAATGGAGACTAAAT
ATAAGATGGAGTCTCTGAAGCTAAAGAGGCCCCCAATACCTTGTCATTAT
CAGCCTTGCAAAGTCAACAACAAGTCTGTCACTATTAAATCAAGCCACCT
TCATTCCCCAAAGGTTACTTATTTGTGCAAGGCCTCCCTTTTAATCTCTG
GGTGGAAACACAGACAGACCCCATCTTTCTGAGAAAAAGCAGGAATAACA
AATGTCGATATATAAACCATGTCTAATGACTATACAATATAATCAGGAAA
CAAGAGTACTAAAAGCAAGTAGGTATGAAGATATTCAAACTCATTTGAAA
TGTGAGTGGTCACGGACACCACCAAGCTTTGTTGGGATATACGACACCCT
AGTGCAAGTAAGAGTACTCCCAGTACTTCACATGTCACCATTCGGAGTGT
AAACTGTTACTGCAAACATTTTTGGAGATATTTACCTGGGTTTTCAAGAG
CCAACACGCTAATATCTAGCAGCTGACTGATCTTCTTGAGATGGGCCACC
TTGGCCTAATAGATGTACCGCCCTGCCACGTTATTTTCATAACATGATGA
TTTCATAATCATTCTCGACGATCGGCAAACAATTCCTACCTCTATTGCAA
TTATCC
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTTGTGTGGTATCTTCTTTTGGGTTTCGTTGAA
ACATTACTTTCTTGCTTTTTCTAGGGCGTAGTTTCCCTCCTTGTGTTGGT
GTTTTCAGTCCATTATCCTTTGAGGGGTTGGATTTATGGAAAGATATTGT
GTAAATTTGGTTTTGTCATGGAATATCTTGGTTTCTCTATCTAAGGTAAT
TAATAATTTTGCTGGACATACTAGGCTGGACTGGCATTTGTGTTCTCTTA
GGATCTGTATGAGATCTGCCCATGATCTTCTAGCTTTCATAGGCTCTGGT
GCATAGTCTGGCGTAATTCTAATAGGTCTGCCTTAATATGTTACTTGAGC
TTTTTCCCACACTACTTTTAATATTCTTTCGCCAGATTAAGCAATTATTG
TTCTAACTCTTATGTGACAGGACCGACTCCTTTTCTGGTCCTGTCTATTT
TGACGTCCGTAGGCTCCTTGCTTGTTTAAGGGCCTCTCTTTCTTTATGTT
GATAAAGTTATCTCCTACAACCCGCTTTAGATTATTTCTGCATTTGTAAT
TTGTCGAGCTTCTTTCGCTATATGTCCATTATCCTTTTTTTTGCTCCCTC
TTTATTCATTCGGAATATCTGTGTGTTCCAAATTTGGGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_o11.b1 MSMg01no113_o11.b1 CHROMAT_FILE:
MSMg01no113_o11.b1 PHD_FILE: MSMg01no113_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:28 2005
         (184 letters)



>mm_chr10_19285892_19286475
          Length = 584

 Score =  348 bits (180), Expect = e-100
 Identities = 183/184 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtctctgaagctaaagaggcccccaataccttgtcattatcagccttgcaaagtcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtctctgaagctaaagaggcccccaataccttgtcattatcagccttgcaaagtcaac 260

                                                                       
Query: 61  aacaagtctgtcactattaaatcaagccaccttcattccccaaaggttacttatttgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaagtctgtcactattaaatcaagccaccttcattccccaaaggttacttatttgtgc 320

                                                                       
Query: 121 aaggcctcccttttaatctctgggtggaaacacagacagaccccatctttctgagaaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 aaggcctcccttttaatctctgggtggaaacacagacagaccccatctttttgagaaaaa 380

               
Query: 181 gcag 184
           ||||
Sbjct: 381 gcag 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)