Query= MSMg01no113_p22.b1 MSMg01no113_p22.b1 CHROMAT_FILE:
MSMg01no113_p22.b1 PHD_FILE: MSMg01no113_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:35 2005
(492 letters)
>mm_chr10_85254860_85255751
Length = 892
Score = 915 bits (473), Expect = 0.0
Identities = 491/501 (98%), Gaps = 9/501 (1%)
Strand = Plus / Plus
Query: 1 atacttctagatttttc-tacaaaaatcaaccacagatctcagatctccatttaaaaaaa 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atacttctagatttttcatacaaaaatcaaccacagatctcagatctccatttaaaaaaa 251
Query: 60 a---a-----tatcattgggccatccaccttcttagaaaacacagcatcttagtctgctc 111
| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atgtagaggctatcattgggccatccaccttcttagaaaacacagcatcttagtctgctc 311
Query: 112 agtgtgaaggaactagactcacactgagagaaggaaagactattggaagacttttgtcaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agtgtgaaggaactagactcacactgagagaaggaaagactattggaagacttttgtcaa 371
Query: 172 cttgacacaagagacaaaaggggagataaaaattcatctaagaaatgacctccacatttt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cttgacacaagagacaaaaggggagataaaaattcatctaagaaatgacctccacatttt 431
Query: 232 gcactgtggtcatgtccacggaccattttcttgatccctgatgaagtccttatagtgcac 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcactgtggtcatgtccacggaccattttcttgatccctgatgaagtccttatagtgcac 491
Query: 292 ggtgggtagcagcacccaagagtagtggttcttaagaaggtcataagaagacaagctgag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtgggtagcagcacccaagagtagtggttcttaagaaggtcataagaagacaagctgag 551
Query: 352 gaagccatggagaaaaagtaggtgagtaaatttctcctgtgattcttgcccttgcttctg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaagccatggagaaaaagtaggtgagtaaatttctcctgtgattcttgcccttgcttctg 611
Query: 412 cttgactctttacagtgacattcctcagtgcaaggtttgactgggacatacatactatac 471
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 612 cttgactctttacagtgacattcctcagtgcaaggtttgactgggatatacatactatac 671
Query: 472 caaccatttctgccctaacat 492
|||||||||||||||||||||
Sbjct: 672 caaccatttctgccctaacat 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_p22.g1 MSMg01no113_p22.g1 CHROMAT_FILE:
MSMg01no113_p22.g1 PHD_FILE: MSMg01no113_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:35 2005
(409 letters)
>mm_chr10_85417434_85418243
Length = 810
Score = 762 bits (394), Expect = 0.0
Identities = 406/410 (99%), Gaps = 1/410 (0%)
Strand = Plus / Minus
Query: 1 caaaatgcagtgagtgtaagtgacttttagcttgtccttggtcacagcttcatagtgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 caaaatgcagtgagtgtaagtgacttttagcttgtccttggtcacagcttcatagtgaca 664
Query: 61 gagccagaattcaaatctcaaagtgcctaattattcaaaccagtacttttttcttttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gagccagaattcaaatctcaaagtgcctaattattcaaaccagtacttttttcttttttg 604
Query: 121 ggggggtggggcacttctcagatacatttattaatgccacactgtaaagggttcttaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ggggggtggggcacttctcagatacatttattaatgccacactgtaaagggttcttaggt 544
Query: 181 aagtctacagcaatgttccatgttcccatctaacacagcctgcttaggtttagctgggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aagtctacagcaatgttccatgttcccatctaacacagcctgcttaggtttagctgggtt 484
Query: 241 agcaccgttcatctcgagtggaatcagaagtagtgatggcccagggcagctgcaggactg 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agcaccgttcatcttgagtggaatcagaagtagtgatggcccagggcagctgcaggactg 424
Query: 301 gagccttccagcactttacttcttttatcagcactcctgacggaata-gggatgaaggtc 359
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 423 gagccttccagcactttacttcttttatcagcactcctgattgaataagggatgaaggtc 364
Query: 360 actgaccccatttctacccagatttcctggtaaacctgggtacaggaggg 409
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 actgaccccatttctacccagatttcctggtaaacctgggtacaggaggg 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space: 320400
Effective search space used: 320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
