BAC Information

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BAC

Clone NameMSMg01-114E02
Chromosome10 (Build37)
Map Location 14,278,259 - 14,278,591
singlet/doubletsinglet
Overlap genenone
Upstream geneDeadc1, Aig1, EG666859, Hivep2, Gpr126, LOC100039571
Downstream geneLOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917, LOC637043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114E02.T7 (MSMg01no114_e02.b1)MSMg01-114E02.TJ (MSMg01no114_e02.g1)
ACCAG326182AG326183
length710712
length of high quality
(start - end)
396 (46 - 441)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no114_e02.b1 PHD_FILE: MSMg01no114_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:54 2005CHROMAT_FILE: MSMg01no114_e02.g1 PHD_FILE: MSMg01no114_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGACCGCGG
AATTCCACCCTCCTTCTCTCATTTACCAGACAGTGTTACAATCACTGCAA
CCACGTTTTTGGTTTTGCTCAAATATTTAATGCCAGCAAATGACCTTGCA
CAGTAAAAGAGGAGAGTTTTCTGTGTTTTACACACACACACACACACACA
CACACACACACACACAGAGGGTGATATACTGGTGATATCAATGCAAGTAC
ATGAAATGCCACTGGACGTCATGCAAAAAAAATGGTTAAAGGATAACTTA
TGCTATGTGTATTTTACTATAATAGGGAAGTGAACAAAATGTCAATAAAT
AGTTTTGGTTGTAACCATAATTCAAAAAGATATTTTGAAATACTTCAGTG
AAAACAAGAAATTGTAGCATAACTGTGTGGTACGTAGTTAGCCAGTACAC
AAAGGAATCAGGAAACAGTGTAAGAAAGAGCTGCACACTTTCTCCTAAGT
TCACAAAGGCAGGAAAGGTTAAGTTCTGACGGTGGAGTTACACTCAGATG
GTCTGAACACCCTCTTTGCCTAGCTCTGTTCCTTCTGTGAATGTGAAAAC
ACTCAGTCACCCCAAGTCTGTCCTCTCCTCAGGGATTGTACCACACACCC
CTGGTTCAAGATCTATGCCCTTGACTCCAGGGTGGGGTCGACCAAACCAT
GAAAATTTGC
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATCCCTACATCTTCCATAGATGCTA
GGTGGTCAGGGTGATGGTGGAGACACAGGATCCCCAGAGCAAGCTGGCTT
GTCAGACCAGTTATGCTGATTATCTCTAGGTTCAGAGGAGAGATCTTATC
CACATCCAATATCATCCTTAGGCCTATAGAGATGCAGGCTCATATGTGCG
TGCGCGCGCATGCGTGACGCGCGTGCATGCGCCACACACACACACAGACA
CACACACAGACATACACTCATACACACACACATGCACACACAGAGACATA
CACACAGATATACACATCTATACACACACACATGCACGCACACACAGACG
CACACAGACATACACACATGCATACACACACAGAGACACCCCGACGTACA
CACACATGCCCACACATACACGCCCGCAGACCCATAGACACACAGACACA
CAGACACTCACTCACCTACACACACCCACACACCCTAGCTGACACTGATG
CCCGCCCGGGTGCACCTCATACTGGCAAAGCTTGCTAAAGTGGATAAGCT
CAATGCGAGCCTGGCCTACCCTGGGAGATCTCCTTACTAAACAGAAGAAA
CCCGAACAGACTGGGCTCTATGCAAATTACCAGCTCGGACTACAATGAAA
ACCCCTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_e02.b1 MSMg01no114_e02.b1 CHROMAT_FILE:
MSMg01no114_e02.b1 PHD_FILE: MSMg01no114_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:54 2005
         (396 letters)



>mm_chr10_14278259_14279053
          Length = 795

 Score =  588 bits (304), Expect = e-172
 Identities = 322/334 (96%), Gaps = 11/334 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccctccttctctcatttaccagacagtgttacaatcactgcaaccacgtttt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaattccaccctcctt-tctcatttaccagacagtgttacaatcactgcaaccacgtttt 275

                                                                       
Query: 65  tggttttgctcaaatatttaatgccagcaaatgaccttgcacagtaaaagaggagagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 274 tggttttgctcaaatatttaatgccagcaaatgaccttgcacagtgaaagaggagagttt 215

                                                                       
Query: 125 tctgtgtttt----------acacacacacacacacacacacacacacacacacacagag 174
           ||||||||||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tctgtgttttacacacacacacacacacacacacacacacacacacacacacacacagag 155

                                                                       
Query: 175 ggtgatatactggtgatatcaatgcaagtacatgaaatgccactggacgtcatgcaaaaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ggtgatatactggtgatatcaatgcaagtacatgaaatgccactggacgtcatgcaaaaa 95

                                                                       
Query: 235 aaatggttaaaggataacttatgctatgtgtattttactataatagggaagtgaacaaaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  aaatggttaaaggataacttatgctatgtgtattttactataatagggaagtgaacaaaa 35

                                             
Query: 295 tgtcaataaatagttttggttgtaaccataattc 328
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  tgtcaataaatagttttggttgtaaccataattc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 795
Length adjustment: 9
Effective length of query: 387
Effective length of database: 786
Effective search space:   304182
Effective search space used:   304182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)