BAC Information

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BAC

Clone NameMSMg01-114E23
Chromosome10 (Build37)
Map Location 16,174,804 - 16,175,296
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC637043, LOC100039492, LOC671439, LOC382457
Downstream geneLOC546472, LOC100039576, LOC627511
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114E23.T7 (MSMg01no114_e23.b1)MSMg01-114E23.TJ (MSMg01no114_e23.g1)
ACCAG326223AG326224
length710727
length of high quality
(start - end)
498 (40 - 537)554 (74 - 627)
definitionCHROMAT_FILE: MSMg01no114_e23.b1 PHD_FILE: MSMg01no114_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:58 2005CHROMAT_FILE: MSMg01no114_e23.g1 PHD_FILE: MSMg01no114_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
ACCTAATGGATCATATCATTTTATGTACTCTGTTTCTTCTGTATCTTTTC
TTCAGACTAGCTCGTCATTTATTATAACCAGTGTCAAACTGAATTGTTTG
ACTCACATGATTGAGCGTTTGCATTCCTTTTATATTTGTATTAGTGTTTG
GACATGTAGCACGAAATACTTAATTCCACCAGTAGCTTAACATTTTAACC
TTTAATGTTAATATTAATGAAATCTGTTCATTAATTTTGGTTTTTTGTGT
TATTATTTTTGATGACAATATTTTTCAGATGTCTTCAAAATTTCTCCATT
GTTCTTTTCCCTAGAAATATTATATTTTATATTATTCTATTTTAATGATG
TATAGGTGTATAGAAGTAATTACATATTAATGAAATGTCCACAGAGACCA
TAAGCATGAATAGGATCTCTTATAGTTGGCATTACAGGTGGTTGTGAGCT
TCCCCACACTGGTTATTGGAATAGAAGAACTTGCCTTTTCAAGTGTTGTA
ATTCTTTTAAACCAATAAGTAGTTTTAAGCCTCTGTCATTCACACTCAAA
TCATTGTTATAGAAGTTAAAAATTTTTAGACTGCTGCTTGCCCTACCTAC
CTAAGGNATTTTATTTATTTTGGCTATGGATACCTCATTATTCCCACCAC
CATTTTAAAG
ACTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAATGATTAGAT
ATCACTTTCAAGCTTGAGTGCTTCCTTCTACAAACTAATTTACCTTCATT
GTTTGGGATTAAAGGTGTGTGCTAAGGGTGTGTCTGTATTCTAGCCAGAG
GGATTAAAGGTGTGTACTAAGGGCTGAGCCACACCACAACTAGAATCAGG
TTTTTTCAGTAAATAAAACAATAGGAGGTTCCACAGTGTGATCAAAAATC
ATGCAATATGGGAATCAGTGTGGAGTGGGTTGGGAGAGCAAGGTAGAAGA
GACAATATGGAGGATAACTAACATTAAAAAAAAACTTTTTAAAAAACCAT
AGGCAACTGTATTACAGTAAAAGCTTTATTTAAAATATATACATAAGTAA
ATGAAATTTAAATTAAGTTATCATATAATGGGAGAGAGTTAAATATCATA
TACTACCACATAAGAATTCAGCATCAGGAATGAATTCATTATTTCAATCT
GTGGCCAAAAGGGTTCCATAAAGTTATCCCTACTCCTTAAATATTATAGA
TTATTACAAATTCTATTGCTTAGTTTTCTATTACCACTCTAAAACACCCA
GCAACATATAAAAGAAACCATTTCTTTATGGTTTCAGAGCCCTGNATATC
ATAATAGTGGAGCACAGGGACAGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_e23.b1 MSMg01no114_e23.b1 CHROMAT_FILE:
MSMg01no114_e23.b1 PHD_FILE: MSMg01no114_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:58 2005
         (498 letters)



>mm_chr10_16174776_16175673
          Length = 898

 Score =  915 bits (473), Expect = 0.0
 Identities = 488/493 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacctaatggatcatatcattttatgtactctgtttcttctgtatcttttcttca 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 521 gaattcacctaatggatcatatcattttatgtactctgtttcttctgtatcttctcttca 462

                                                                       
Query: 66  gactagctcgtcatttattataaccagtgtcaaactgaattgtttgactcacatgattga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gactagctcgtcatttattataaccagtgtcaaactgaattgtttgactcacatgattga 402

                                                                       
Query: 126 gcgtttgcattccttttatatttgtattagtgtttggacatgtagcacgaaatacttaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcgtttgcattccttttatatttgtattagtgtttggacatgtagcacgaaatacttaat 342

                                                                       
Query: 186 tccaccagtagcttaacattttaacctttaatgttaatattaatgaaatctgttcattaa 245
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tccatcagtagcttaacattttaacctttaatgttaatattaatgaaatctgttcattaa 282

                                                                       
Query: 246 ttttggttttttgtgttattatttttgatgacaatatttttcagatgtcttcaaaatttc 305
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttttggttttatgtgttattatttttgatgacaatatttttcagatgtcttcaaaatttc 222

                                                                       
Query: 306 tccattgttcttttccctagaaatattatattttatattattctattttaatgatgtata 365
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tccattgttcttttccatagaaatattatattttatattattctattttaatgatgtata 162

                                                                       
Query: 366 ggtgtatagaagtaattacatattaatgaaatgtccacagagaccataagcatgaatagg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ggtgtatagaagtaattacatattaatgaaatgtccacagagaccataagcatgaatagg 102

                                                                       
Query: 426 atctcttatagttggcattacaggtggttgtgagcttccccacactggttattggaatag 485
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atctcttgtagttggcattacaggtggttgtgagcttccccacactggttattggaatag 42

                        
Query: 486 aagaacttgcctt 498
           |||||||||||||
Sbjct: 41  aagaacttgcctt 29


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)