BAC Information

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BAC

Clone NameMSMg01-114K07
Chromosome10 (Build37)
Map Location 72,863,711 - 72,864,096
singlet/doubletsinglet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114K07.T7 (MSMg01no114_k07.b1)MSMg01-114K07.TJ (MSMg01no114_k07.g1)
ACCAG326473AG326474
length715727
length of high quality
(start - end)
587 (41 - 627)386 (77 - 462)
definitionCHROMAT_FILE: MSMg01no114_k07.b1 PHD_FILE: MSMg01no114_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:22 2005CHROMAT_FILE: MSMg01no114_k07.g1 PHD_FILE: MSMg01no114_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATGAAAACAACACTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCATGGATGTGGAGAAAGAGGAACACTCATCCATTGTTGGTGGGATTG
CAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCAAGATGCCCCT
CCACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAAGTAACACATTCACAAAGGAACT
CACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAATCCTAGGAT
ACCCAAGATATAAGATACCATTTGCTAACCCCTTGAACTCAAGAAGAATG
AAGACTGATGCACAA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACACATGAATTAAGTAATGAGA
TAAAAAGTCTTTGCTGTACACAAAGATCCTAATAATAAGGAAAAAAGAAA
AACTATAGATTATAAGAAAATATTTCTCCCCGGTATCTGCCCAATTCTGA
CATCTCAATTACAAAACATTTCTGAATGCTAAACAATGAAAAAACTAAAG
CCCTTTGTGATATCTATTATTTCTGGCTCGTAGAGTCTTTCTGTCTTCTC
TTCTACATAGTTTCCAGAGTCGTGAGTTGAGAGTGTTGTGGAAGGCATAC
CATTTAGAACTGAGTTCTGAAGTCTATCACTGTATGCACATGGCCCAGCT
GCGTGTGTCTGTGTTAATTCCATTCTACTGCAGGAGAAACCTTCTCTGAT
GAGGAAATATAACGGGATGAAGTGACATGTTGTTAGTTGTAACTTTATCA
CTATATTCCTTTAATAGAATCAAGAGCATTACGTTTTCCCCTAAGCCCGT
GATCTATCTAGTCTCAGATTCTTGCTCACTTTAGCAGAGCCAAGCATAGT
TCCTACTCCCTAGAGCACGCCTTAATCCCCACCATAAATTGATGGGCTAA
TCCCATAACATGTGTGCCCTGAATGTACCAATGTACCCTGCCATATATCA
CCACGGTTTGATAGGAACAGTTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_k07.g1 MSMg01no114_k07.g1 CHROMAT_FILE:
MSMg01no114_k07.g1 PHD_FILE: MSMg01no114_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:22 2005
         (386 letters)



>mm_chr10_72863511_72864296
          Length = 786

 Score =  700 bits (362), Expect = 0.0
 Identities = 380/386 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacacatgaattaagtaatgagataaaaagtctttgctgtacacaaagatcctaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 atacacatgaattaagtaatgagataaaaagtctttgctgtacacaaagatcctagtaat 260

                                                                       
Query: 61  aaggaaaaaagaaaaactatagattataagaaaatatttctccccggtatctgcccaatt 120
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaggaaaaaagaaaaaccatagattataagaaaatatttctccctggtatctgcccaatt 320

                                                                       
Query: 121 ctgacatctcaattacaaaacatttctgaatgctaaacaatgaaaaaactaaagcccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgacatctcaattacaaaacatttctgaatgctaaacaatgaaaaaactaaagcccttt 380

                                                                       
Query: 181 gtgatatctattatttctggctcgtagagtctttctgtcttctcttctacatagtttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatatctattatttctggctcgtagagtctttctgtcttctcttctacatagtttcca 440

                                                                       
Query: 241 gagtcgtgagttgagagtgttgtggaaggcataccatttagaactgagttctgaagtcta 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtcctgagttgagagtgttgtggaaggcataccatttagaactgagttctgaagtcta 500

                                                                       
Query: 301 tcactgtatgcacatggcccagctgcgtgtgtctgtgttaattccattctactgcaggag 360
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tcactgtatgcacatggtccagctgtgtgtgtctgtgttaattccattctactgcaggag 560

                                     
Query: 361 aaaccttctctgatgaggaaatataa 386
           ||||||||||||||||||||||||||
Sbjct: 561 aaaccttctctgatgaggaaatataa 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)