BAC Information

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BAC

Clone NameMSMg01-115E02
Chromosome10 (Build37)
Map Location 103,761,004 - 103,761,468
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115E02.T7 (MSMg01no115_e02.b1)MSMg01-115E02.TJ (MSMg01no115_e02.g1)
ACCAG326931AG326932
length714712
length of high quality
(start - end)
469 (47 - 515)454 (85 - 538)
definitionCHROMAT_FILE: MSMg01no115_e02.b1 PHD_FILE: MSMg01no115_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:09 2005CHROMAT_FILE: MSMg01no115_e02.g1 PHD_FILE: MSMg01no115_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAAGGAACTCTCACAGGGCAAACCTCAAAAGATTATGTAAGAC
ATCAACTGGAAGATCTTACTTTATATATCCTACTTAACTGAATTTATGCC
TATAATTAAAGTTCACTCTGCTTGATCTGGTTGATAACAACACTATATTG
AGTTTTTGCTGAGTACCAACAACTCTGATTAATGAATAAAGGTGAATGAA
TAAAAATTATAGAATTTATATTCTAACAAGAGAAAGCAAAATTACTTTTG
ATTATATGTACTTTAAAAATGTAATGTGTTGAAAACTCACCTCGAGATCT
TGTTTATGTGGTATAGGGTGTTTCGCATGACAATGCAGCATATGATATTC
CATCAAATTAACATTTCTTTTCTGCTTTTTCCTTTATCAGCACACTTTAC
TTACATCTTTAGACCTTCCCTCTTAGAATCCTTTTGCTTTAGGACTAATG
CTGGTCATGATTACCGGGGTGGAATGAATATATTACCTTAAGAATAATTC
CATTACACTTGCTACTTACTAGCATATAATAATATATGACACCACTGAAG
ACATATATAGACCATAATAATAGGCCGAAACCAAGTGCTAGCGCCACCCA
GAGAAATGCACTTATCTACCGAAAGAAACACTGAACATTGGATAGGCCAG
CAATACCTAAAGCT
CCCCCCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCTGAGGAATACC
AAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCGTTAATCATCAGG
GAAATGCAAATCAAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGATGAGGATGTGGGG
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTGTCCTGGGCATATATCCAGAAGATGTTCCAACT
GGTAAGAAGGACACATGCTCTACTATGTCCATCGCAGCCTTATTTATAAT
AGTCAGAAGCTGGAAAGAACCCAGATGCCTCACAACAGAAGAATGGATAC
AGAAAATCTGGTACATTTACACAATGGAGTACTATTCAGTTATTAAAAAG
AATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCAT
CCTGAGTGAGGTAACCCAATCACAAAGATCTCACATGATATGTATTTGCT
AAGCGGATATCAGTCCAGAAACTTAGAATACCCGAGTAATAAGATACCAC
CTGTAAAACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_e02.b1 MSMg01no115_e02.b1 CHROMAT_FILE:
MSMg01no115_e02.b1 PHD_FILE: MSMg01no115_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:09 2005
         (469 letters)



>mm_chr10_103760800_103761669
          Length = 870

 Score =  847 bits (438), Expect = 0.0
 Identities = 459/466 (98%), Gaps = 3/466 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaaggaactctcacagggcaaacctcaaaagattatgtaagacatcaactgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaaggaactctcacagggcaaacctcaaaagattatgtaagacatcaactgga 264

                                                                       
Query: 65  agatcttactttatatatcctacttaactgaatttatgcctataattaaagttcactctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatcttactttatatatcctacttaactgaatttatgcctataattaaagttcactctg 324

                                                                       
Query: 125 cttgatctggttgataacaacactatattgagttttt-gctgagtaccaacaactctgat 183
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 cttgatctggtttataacaacactatattgagttttttgctgagtaccaacaactctgat 384

                                                                       
Query: 184 taatgaataaaggtgaatgaataaaaattatagaa-tttatattctaacaagagaaagca 242
           |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 385 taatgaataaaggtgaatgaataaaaattata-aagtttatatactaacaagagaaagca 443

                                                                       
Query: 243 aaattacttttgattatatgtactttaaaaatgtaatgtgttgaaaactcacctcgagat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaattacttttgattatatgtactttaaaaatgtaatgtgttgaaaactcacctcgagat 503

                                                                       
Query: 303 cttgtttatgtggtatagggtgtttcgcatgacaatgcagcatatgatattccatcaaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttgtttatgtggtatagggtgtttcgcatgacaatgcagcatatgatattccatcaaat 563

                                                                       
Query: 363 taacatttcttttctgctttttcctttatcagcacactttacttacatctttagaccttc 422
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 564 taacatttcttttctgctttttcctttatcagcaggctttacttacatctttagaccttc 623

                                                         
Query: 423 cctcttagaatccttttgctttaggactaatgctggtcatgattac 468
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctcttagaatccttttgctttaggactaatgctggtcatgattac 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space:   394740
Effective search space used:   394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)