BAC Information

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BAC

Clone NameMSMg01-115J11
Chromosome10 (Build37)
Map Location 45,218,556 - 45,218,842
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b
Downstream geneDbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115J11.T7 (MSMg01no115_j11.b1)MSMg01-115J11.TJ (MSMg01no115_j11.g1)
ACCAG327183AG327184
length747730
length of high quality
(start - end)
290 (46 - 335)612 (79 - 690)
definitionCHROMAT_FILE: MSMg01no115_j11.b1 PHD_FILE: MSMg01no115_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:34 2005CHROMAT_FILE: MSMg01no115_j11.g1 PHD_FILE: MSMg01no115_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTGTTAAAAAAAAAAATAGACCACATGAAATTGAGAGGTAAA
AGTATTGGAAGAGATAGGAGAGCAGTTACGGAAAAGAAATGGGGATAGAT
TTAGTCAAAACACATTATACGTATGTATGAAATTCTCAATCAGTAAAAGG
AGAAAAAATAAACAAAACCCCCTTTCACAATATTGTCATAATTTTGAGGA
AAACCACTAAGTTCTTTAAGTGGAACAGGGAGTGACAGAGGTGTCCCTGA
GCTCTTGTAGTTTTTTGTTGTTGTTTTGTTTGTTTGCTTGGCTTGCNNNC
CCTCCCTTTTTTCCCCCCCCCCTCTCCCTTCCCTCCCTCCTCCCCTTCCT
CCTTTCCTTCCCCCCCTTNTCTTTCTTTCCCCCCCCCCCTCCTCCCTCCC
TTTCCCCCCTTCCCCCTCTCCCCCTCCCTCCCCCTNTCCCCTNTCTTCCC
CCCTTCTCCTCCTTCTCCTTTTTCCCCTTTTCCCCCCCCCCCCCCCCCCC
CTCCCCTTCCCCTTTCTCCCCCTCTTTTTTTTCCCCTCCCCCCTCCCTTC
CTTTTTCTCCCTTCTTCCTCCTCTCTTCCCCCCCCCCTCTTTCCTTTTTT
CTCCCTCTCCCCCCTTCCCCCCCCCTCTCCTCCCCCCTTCTCTTCCCCCC
TTTTTCTCCCCTCTCTTTTCCTCCCCTCCTCTTTTCCTCTCCCCCTC
NTTACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTATCCATCCATCCATCCA
TCCATCCATCCATCCATCCATCCATCCATCCATCCATCTATCCATCCATC
CATCCATCTTCTTGTTTATTTTTTTGAGGCAGGGTTTCTCTGTGTAGCCC
TGGCTGTCCTGGAACGCACTTTGTAGACCAGGCTGGCCTCAAACTCACCA
ATCTGCCTGCCTCTGCCTCCCAAGCACTGGGACTAAAGACATGCACCACC
ACATCCAACTTTCAAGGAAAACATTCTTAAGCATGACATTAAATGAAGAC
TAATTAAACTTTCTTCATCAGAATAAAAAACCTTTACTTTATAAGATTAT
TTACGAGAGAGGAAAACAAGCCACCGAATAGAAAAATATTGGAAAATATT
TATCTGGCAAATGTCCTGCATCTACAGTGTATATTAAAAATTCTCAGAGT
ACTACCGAGAAAATAAATAACTCAGAAAAAAATGGGCAAAAATACAAACA
GTTCATCAGAGGATAAATATAATAGCATCAAAATACCATGTTCAGCATCA
GCAGCCATTACTGAAATGAAATTCTAACCACTACAATTTACCCTAATTAT
AACCATGACCACTATCTATAGAGTAGCAAAACTTAGGTTCACTTGATAAG
CATCAACTATTGGCAAATATGCATAGCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_j11.b1 MSMg01no115_j11.b1 CHROMAT_FILE:
MSMg01no115_j11.b1 PHD_FILE: MSMg01no115_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:34 2005
         (290 letters)



>mm_chr10_45218203_45218894
          Length = 692

 Score =  524 bits (271), Expect = e-153
 Identities = 284/289 (98%), Gaps = 5/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttg-ttaaaaaaaaaaatagaccacatgaaattgagaggtaaaagtattgg 63
           |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 640 gaattcactttgtttaaaaaaaaa--tagaccacatgaaattgagaggtaaaagtattgg 583

                                                                       
Query: 64  aagagataggagagcagttacggaaaagaaatggggatagatttagtcaaaacacattat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aagagataggagagcagttacggaaaagaaatggggatagatttagtcaaaacacattat 523

                                                                       
Query: 124 acgtatgtatgaaattctcaatcagtaaaaggagaaaaaataaacaaaaccccctttcac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acgtatgtatgaaattctcaatcagtaaaaggagaaaaaataaacaaaaccccctttcac 463

                                                                       
Query: 184 aatattgtcataattttgaggaaaaccactaagttctttaagtggaacagggagtgacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aatattgtcataattttgaggaaaaccactaagttctttaagtggaacagggagtgacag 403

                                                            
Query: 244 aggtgtccctgagctcttgtagttttttgttgttgtt-ttgttt-gttt 290
           ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 402 aggtgtccctgagctcttgtagttttttgttgttgttgttgttttgttt 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 692
Length adjustment: 9
Effective length of query: 281
Effective length of database: 683
Effective search space:   191923
Effective search space used:   191923
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)