BAC Information

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BAC

Clone NameMSMg01-115K12
Chromosome10 (Build37)
Map Location 45,218,568 - 45,218,842
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b
Downstream geneDbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115K12.T7 (MSMg01no115_k12.b1)MSMg01-115K12.TJ (MSMg01no115_k12.g1)
ACCAG327232AG327233
length757725
length of high quality
(start - end)
294 (46 - 339)611 (80 - 690)
definitionCHROMAT_FILE: MSMg01no115_k12.b1 PHD_FILE: MSMg01no115_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:39 2005CHROMAT_FILE: MSMg01no115_k12.g1 PHD_FILE: MSMg01no115_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTGTTAAAAAAAAAAATAGACCACATGAAATTGAGAGGTAAA
AGTATTGGAAGAGATAGGAGAGCAGTTACGGAAAAGAAATGGGGATAGAT
TTAGTCAAAACACATTATACGTATGTATGAAATTCTCAATCAGTAAAAGG
AGAAAAAATAAACAAAACCCCCTTTCACAATATTGTCATAATTTTGAGGA
AAACCACTAAGTTCTTTAAGTGGAACAGGGAGTGACAGAGGTGTCCCTGA
GCTCTTGTAGTTTTTTGTTGTTGTTTTGCTTGGTTGTAAAGACTCCGCTT
GCGTCTTTTCTCCATACGATACCGAGCGCTGCGCCCGCCCTACCCATTAA
TTCGTCAGATGCACCCCCATTCTGACTCTTCTGCCCCGCCCCTACCTCCC
ATGACAAAATTCCCTTTTGTGCCTTAATACCCTGTCTGATATCAACTGGT
TTTTCCCCTCCGTCTCTCCCCCCTTACCCTCTGATCCTTTTTTCCCTCAC
CTCATGCTCTCATATTTTTTTTCCCCCCTCCCCATTTGTCCCCCACCCTC
TCTCCCCCCACATTTCCTCCCTTCTTATCGTTTAGCCCCTCCCATCACTT
TTCCCAGCCCCTCTCCGACCCCCACCTTTTTCCCCCCCTGTCTCTCTTCC
TTCCCCCTCCGCATCCACATACTCGTGCCCTGCCTCCTCTCCTGGTGCCC
ACTTGCG
NNNTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTATCCATCCATCCATCC
ATCCATCCATCCATCCATCCATCCATCCATCCATCCATCTATCCATCCAT
CCATCCATCTTCTTGTTTATTTTTTTGAGGCAGGGTTTCTCTGTGTAGCC
CTGGCTGTCCTGGAACGCACTTTGTAGACCAGGCTGGCCTCAAACTCACC
AATCTGCCTGCCTCTGCCTCCCAAGCACTGGGACTAAAGACATGCACCAC
CACATCCAACTTTCAAGGAAAACATTCTTAAGCATGACATTAAATGAAGA
CTAATTAAACTTTCTTCATCAGAATAAAAAACCTTTACTTTATAAGATTA
TTTACGAGAGAGGAAAACAAGCTACCCAATAGAAAAATATTGGAAAATAT
TTATCTGGCAAATGTCCTGCATCTACAGTGTATATTAAAAATTCTCAGAG
TACTACCGAGAAAATAAATAACTCAGAAAAAAATGGGCAAAAATACAAAC
AGTTCATCAGAGGATAAATATAATAGCATCAAAATACCATGTTCAGCATC
AGCAGCCATTACTGAAATGAAATTCTAACCACTACAATTTACCCTAATTA
TAACCATGACCACTATCTATAGAGTAGCAAAACTTAGGTTCACTTGAAAA
GCATCAACTATTGGCAAATATGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_k12.b1 MSMg01no115_k12.b1 CHROMAT_FILE:
MSMg01no115_k12.b1 PHD_FILE: MSMg01no115_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:39 2005
         (294 letters)



>mm_chr10_45218215_45218908
          Length = 694

 Score =  518 bits (268), Expect = e-151
 Identities = 274/276 (99%), Gaps = 1/276 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttgttaaaaaaaaaaatagaccacatgaaattgagaggtaaaagtattgga 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaattcactttgtt-taaaaaaaaatagaccacatgaaattgagaggtaaaagtattgga 570

                                                                       
Query: 65  agagataggagagcagttacggaaaagaaatggggatagatttagtcaaaacacattata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agagataggagagcagttacggaaaagaaatggggatagatttagtcaaaacacattata 510

                                                                       
Query: 125 cgtatgtatgaaattctcaatcagtaaaaggagaaaaaataaacaaaaccccctttcaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cgtatgtatgaaattctcaatcagtaaaaggagaaaaaataaacaaaaccccctttcaca 450

                                                                       
Query: 185 atattgtcataattttgaggaaaaccactaagttctttaagtggaacagggagtgacaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atattgtcataattttgaggaaaaccactaagttctttaagtggaacagggagtgacaga 390

                                               
Query: 245 ggtgtccctgagctcttgtagttttttgttgttgtt 280
           ||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggtgtccctgagctcttgtagttttttgttgttgtt 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)