BAC Information

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BAC

Clone NameMSMg01-116A06
Chromosome10 (Build37)
Map Location 100,036,364 - 100,036,859
singlet/doubletsinglet
Overlap gene4930430F08Rik
Upstream geneLOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3
Downstream gene1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116A06.T7 (MSMg01no116_a06.b1)MSMg01-116A06.TJ (MSMg01no116_a06.g1)
ACCAG327502AG327503
length726727
length of high quality
(start - end)
496 (78 - 573)525 (77 - 601)
definitionCHROMAT_FILE: MSMg01no116_a06.b1 PHD_FILE: MSMg01no116_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:08 2005CHROMAT_FILE: MSMg01no116_a06.g1 PHD_FILE: MSMg01no116_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCG
CGGAATTCATGTAAGTATCCCGNAATGGCCAGCATAAACCAAGATGGTGA
CGATGGACCTGTAAGGAGAAAAAAATGATGGTATTAACTTTAGTCGAAAA
CAGCATCGTAACTTATACTTGTGAATACTGCTACCTGCCAGGTCCACTGT
AAGGGTCTACCTTTTCTCATTCTAGTTCAGTTCCATAGCTGCTCTTTTGA
CAGTGCTGTCTGTCTTCCCCATTGGGATATGAGCTTCCTGAAGGCAGAGC
AAATGTTTTGTTTACTCTGCCAATACCTGAAAAGTGCCAGTAACATAATG
AATATAGTCTGTTAGTGACTACAGAAAAAGTAAGTGTGAGCCTGACTCTA
GTGTCACCAAAGGAATGTTAGTGGCAGAATGGTAGGGTAGTCTGGGATCA
CAGTTGGTTAGGACGTTGCTGGGTAGCTGTTTCCTCCACATGAAAACAAC
CACTCTAGATGGAGCCTCTTTAAGACCCAGAAAGTAAACAAACTTCACAC
GTCTCACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTA
TCATAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCT
GTAAGGCATTTTCTCATTTAGTGATCAAGGGGGGAAAGGCCCCCTTGTGG
GTGGGAACCATCTCTGGGCTTGTAGT
NTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGTTACACAGAA
AAACCCTGTCCAAAAAAATAAATAAATAAAAATAATTAAAGAAGCAACTA
TTATAGAAAATCACAACTTCACAAAGACCAAATGGATCTTAGGGTAGAAA
ACCCCAACAGATATGTATGCAATGCAATCCCCAGAGCAAAGGCTGGGGGA
ACAAGACAGAAGAAGAGAAAGAACAATTTACAGTTAAAGGAGCAAGAGGT
CTGCTGTGCTTCTGTCTCCTACAACTGACATGATACCCCAATAATAAGGC
TTCCTGAGAAAGAACCGAACAAGGACAACACCAACAGGTGCTTTAATATA
TATGCACGCCAGAAGTCTCACAGGGCGTCACCACTACACAAGTTGCTAGA
GTCAATTACCCAATGCTGAGAGATGAGTCGGTGAATAAGTCTTCCTCTAA
ATGTGAGCCCTGTAATTAGAGAAGATACCAAGTGTCACCTCTGAAAACAT
GAGTACAAAGCGAAGAACACTGAATGGGCTCAGCGGTGCATATGTAAAAG
ATTCTGGGAGGGTGTAAGAGAGAGAGGGCATACACACAATTCTGGAGAGA
AAGAGTGGGTAGATGATATAATAATATTTAAAAAAGAAAACTACCAAATA
GGCATCATTGGCCTTATACATGACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_a06.b1 MSMg01no116_a06.b1 CHROMAT_FILE:
MSMg01no116_a06.b1 PHD_FILE: MSMg01no116_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:08 2005
         (496 letters)



>mm_chr10_100036164_100037059
          Length = 896

 Score =  951 bits (492), Expect = 0.0
 Identities = 495/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccagcataaaccaagatggtgacgatggacctgtaaggagaaaaaaatgatggtattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccagcataaaccaagatggtgacgatggacctgtaaggagaaaaaaatgatggtattaa 260

                                                                       
Query: 61  ctttagtcgaaaacagcatcgtaacttatacttgtgaatactgctacctgccaggtccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttagtcgaaaacagcatcgtaacttatacttgtgaatactgctacctgccaggtccac 320

                                                                       
Query: 121 tgtaagggtctaccttttctcattctagttcagttccatagctgctcttttgacagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaagggtctaccttttctcattctagttcagttccatagctgctcttttgacagtgct 380

                                                                       
Query: 181 gtctgtcttccccattgggatatgagcttcctgaaggcagagcaaatgttttgtttactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgtcttccccattgggatatgagcttcctgaaggcagagcaaatgttttgtttactc 440

                                                                       
Query: 241 tgccaatacctgaaaagtgccagtaacataatgaatatagtctgttagtgactacagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccaatacctgaaaagtgccagtaacataatgaatatagtctgttagtgactacagaaa 500

                                                                       
Query: 301 aagtaagtgtgagcctgactctagtgtcaccaaaggaatgttagtggcagaatggtaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtaagtgtgagcctgactctagtgtcaccaaaggaatgttagtggcagaatggtaggg 560

                                                                       
Query: 361 tagtctgggatcacagttggttaggacgttgctgggtagctgtttcctccacatgaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtctgggatcacagttggttaggacgttgctgggtagctgtttcctccacatgaaaac 620

                                                                       
Query: 421 aaccactctagatggagcctctttaagacccagaaagtaaacaaacttcacacgtctcac 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcactctagatggagcctctttaagacccagaaagtaaacaaacttcacacgtctcac 680

                           
Query: 481 tgtactggctagtttt 496
           ||||||||||||||||
Sbjct: 681 tgtactggctagtttt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)