BAC Information

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BAC

Clone NameMSMg01-116C19
Chromosome10 (Build37)
Map Location 64,818,947 - 64,819,199
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna3
Downstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116C19.T7 (MSMg01no116_c19.b1)MSMg01-116C19.TJ (MSMg01no116_c19.g1)
ACCAG327621AG327622
length712744
length of high quality
(start - end)
464 (80 - 543)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no116_c19.b1 PHD_FILE: MSMg01no116_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:21 2005CHROMAT_FILE: MSMg01no116_c19.g1 PHD_FILE: MSMg01no116_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCAAAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGAAATTCTCCCCAAAAAAATAAGCTATTAGCTTTGCT
CTTGGTTACCCATCAAAACTTGAAGGTATGACATCATTGCTGATGGTACC
ACATAAGTTGGTGATGGGACTTTGGGAAATCAACCTAGTATTAACCTTTA
AGTTGCCTTTGTGCCGGTATCTTTCATAGTGCTGAAACATACTATGCTGA
AAGAGAAACAAAGTTATCAGCAGTCTTACCTAACTATAACATCTGCAATA
TACAATAATGACAATCCTTGCAAAAATGATCATTGATCCAATGGCAGCAT
TAATGTTATGGGATGAATCAGCCACTTTTTGGTTAAATTTATGGCCTTTT
TCACAGAAGAAAACACATGAGCAATGCAGTAAATCTGACCAAGAATCCAT
TATCAGCGATATCATAACCTACTATTATTATTTTGTTCAGTATATATGCA
CCATAATCTTCTTCTACACATATAATTCCATACAGATAGTTTAGTGAAGT
TCTTAGTCCTTATTAGAGAAGTGTCTTTGAAGTGGGTGGTAGCTAGTGCA
AAGATCTACAACTGATGAAAGTGCACAGGACCAATGTCTATGGAATGTAA
ATTGTACTTCTTACTCATGATGCCCTCCATGAAACCCTCAGAGAAAATTG
CAGAACAAAGAA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCAGCCTACAAAATGACTAGCAGAGTATA
ATCTTGTACGCATGAATATAAATGTCGTTTGAAATACAAAGTGATTATGC
TGGATAGAAACAATCTGTGATGGTGGTTCAAGCATTTCTTCTGTATTAGG
TAACCATACTTACTTGGATAGATACAAAGAGGTTCATTATAGATATGTAG
GTAGGCAGGCAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGGTAGATAGAT
ACATAAAGACAAACATACATATTCATACATATATATGTATATACATAGAA
GCATGAACGATGCATACTATATAATATATATTATATTTTAAATAATATAC
TGATCTAAATATAGATGATAAGCATATATAGTTATATATATATATATATT
ATATATATGATAGCTATAAATATCATCAATGTCCTTCATATTTAATTTCG
CATAGGCAAGGTCGTAAGAATTACTTTAAGCTGCCCCCTAGGATCTAACA
AGTTACAGGAAATTTGTTGGAGTTGTTTCCCTGTGCCCCACTAACAGTTA
GTTGGCCATCCACTTTCCTCATTGATTTAGCTTACTTTTCAACCTGGTTA
ACCGCTATATGGAACTCCAAACCCCCCGCTTATTACGCACCCCATGGCGA
TTATTTTCTTTCTGCACACCCCCACGAGTCTTGCCCCACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_c19.g1 MSMg01no116_c19.g1 CHROMAT_FILE:
MSMg01no116_c19.g1 PHD_FILE: MSMg01no116_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:21 2005
         (245 letters)



>mm_chr10_64818747_64819391
          Length = 645

 Score =  431 bits (223), Expect = e-125
 Identities = 242/253 (95%), Gaps = 8/253 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagcctacaaaatgactagcagagtataatcttgtacgcatgaatataaatgtcgttt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 atcagcctacaaaatgactagcagagtataatcttgtactcatgaatataaatgtcgttt 260

                                                                       
Query: 61  gaaatacaaagtgattatgctggatagaaacaatctgtgatggtggttcaagcatttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatacaaagtgattatgctggatagaaacaatctgtgatggtggttcaagcatttctt 320

                                                                       
Query: 121 ctgtattaggtaaccatacttacttggatagatacaaagaggttcattatagatatgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ctgtattaggtaaccatacttacttggatagatacaaagaggttcattagagatatgtag 380

                                                                       
Query: 181 gtaggcaggcaggtaggtaggtaggtaggtaggtaggtaggtag--------atagatac 232
           | ||||||||||||||||||||||||||||||||||||||||||        ||||||||
Sbjct: 381 gcaggcaggcaggtaggtaggtaggtaggtaggtaggtaggtaggtaggtagatagatac 440

                        
Query: 233 ataaagacaaaca 245
           |||||||||||||
Sbjct: 441 ataaagacaaaca 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)