BAC Information

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BAC

Clone NameMSMg01-117H01
Chromosome10 (Build37)
Map Location 113,765,296 - 113,856,426
singlet/doubletdoublet
Overlap geneTrhde
Upstream geneLOC100042655, LOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117H01.T7 (MSMg01no117_h01.b1)MSMg01-117H01.TJ (MSMg01no117_h01.g1)
ACCAG328572AG328573
length703685
length of high quality
(start - end)		650 (51 - 700)606 (80 - 685)
definitionCHROMAT_FILE: MSMg01no117_h01.b1 PHD_FILE: MSMg01no117_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:00 2005CHROMAT_FILE: MSMg01no117_h01.g1 PHD_FILE: MSMg01no117_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,765,296 - 113,765,941)(113,855,862 - 113,856,426)
sequence
NNNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATGAACTGCGCTTATCTTGGAATGAATTTGTCATGTTGT
TTTATTTCTTAAAGCATAAAAATAGCTACATTAAAAAGATGGTAAATATG
TCACAAATGGAAAGGATTTGCAATGTTTTTTGTTTTGCTTCTATTTGGGT
GAGCAAACGAATTGTCAAAGGTATTCCAAGTCAAGTATATATTACAGAGA
CATTGTTAATTAGGTACTTTTAAAGGTTAATATCTTGAAAATATGCATTC
AAGCAAAGAAAAAATACATGATAGCATAGGTAAAATGTTCTCTGGTCCAC
ATTAATGTATTGTGTATGGTGGTCGGTTTGAATGTCAACATGTCACAATT
TAGTATCACTAAAATAAAGAGTTAAACGGCTGCTGATCTGATGTCTTTAA
TTGATATAGAAAGGTCTTCACTTGGCATGTATGCTGTCTTCTGATAACAG
TCTATATGGAGGAGAGTAGCAGAGAACTATTCCTTGACCTTTGGTGTCTC
AGTGTCTCCAGCCCTAGTCCCTGTGATTGAGTTTGTCTGCCTGTTGCTAC
TGCTGTTGAGTTTTTCACTGGTTTGAGACCCAGTGGTTCCAGGATTCCAT
TGTTGACTACGGGCTTTCTACTCTCCAGGAACTCTTTGTGTTTGGCGTAC
ATT

TTTTCTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTTCATTAATTAAAAATA
ATTAAATGTTGGGCCCCACTATTTATTGATGGCATATGAAGCTCCACTGA
GAGGCAGTGCTGTTCTCAGAGAGGCTCCTGTGAGCAATATTTCTCATTGT
CTTTGAAAATAATTAAACCCACATTTCAATGTTAATACAATCACTAATGA
AAAGATTCTTGTACTAACAGAGCAAGAAGGGACTTTAGAACCCTTGGACT
TTAGCCCTGTCCAATTAGGATGAAAAACGAAGCCCAAAGCATTGACCTTG
ACTCACTCAGACCAGAAACAAACTCCTAGCAAAATTAGTTCTAAGAAATC
TACTTGAAAATAGATGAATATTTTTTATTAATTATAAAATATATTTTTAA
AGTAGTGGTTTATTTTCATTCAATCAATGTAACTTTTCTATGGAAGATGT
TTTATGCTTTAATATTATATCATTAGTATCATGTCTGATTATTCAGTAGA
AGTTTTATGTATGTGTTTTACTCTAATAATAACAAGCTTGTCTTTGCAAA
TGTAATTAAATATTTGATATTCCCCACGTAAAGGCAAAACTATTTAATTA
CTAAACTTGAAGTTATAATTTAGCAAAAGACTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_h01.b1 MSMg01no117_h01.b1 CHROMAT_FILE:
MSMg01no117_h01.b1 PHD_FILE: MSMg01no117_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:00 2005
         (650 letters)



>mm_chr10_113765092_113766141
          Length = 1050

 Score = 1234 bits (638), Expect = 0.0
 Identities = 644/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgaactgcgcttatcttggaatgaatttgtcatgttgttttatttcttaaag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgaactgagcttatcttggaatgaatttgtcatgttgttttatttcttaaag 264

                                                                       
Query: 65  cataaaaatagctacattaaaaagatggtaaatatgtcacaaatggaaaggatttgcaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataaaaatagctacattaaaaagatggtaaatatgtcacaaatggaaaggatttgcaat 324

                                                                       
Query: 125 gttttttgttttgcttctatttgggtgagcaaacgaattgtcaaaggtattccaagtcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttttttgttttgcttctatttgggtgagcaaacgaattgtcaaaggtattccaagtcaa 384

                                                                       
Query: 185 gtatatattacagagacattgttaattaggtacttttaaaggttaatatcttgaaaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatatattacagagacattgttaattaggtacttttaaaggttaatatcttgaaaatat 444

                                                                       
Query: 245 gcattcaagcaaagaaaaaatacatgatagcataggtaaaatgttctctggtccacatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcattcaagcaaagaaaaaatacatgatagcataggtaaaatgttctctggtccacatta 504

                                                                       
Query: 305 atgtattgtgtatggtggtcggtttgaatgtcaacatgtcacaatttagtatcactaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtattgtgtatggtggtcggtttgaatgtcaacatgtcacaatttagtatcactaaaa 564

                                                                       
Query: 365 taaagagttaaacggctgctgatctgatgtctttaattgatatagaaaggtcttcacttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaagagttaaacggctgctgatctgatgtctttaattgatatagaaaggtcttcacttg 624

                                                                       
Query: 425 gcatgtatgctgtcttctgataacagtctatatggaggagagtagcagagaactattcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcatgtatgctgtcttctgataacagtctatatggaggagagtagcagagaactattcct 684

                                                                       
Query: 485 tgacctttggtgtctcagtgtctccagccctagtccctgtgattgagtttgtctgcctgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgacctttggtgtctcagtgtctccagccctagtccctgtgattgagtttgtctgcctgt 744

                                                                       
Query: 545 tgctactgctgttgagtttttcactggtttgagacccagtggttccaggattccattgtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgctactgctgttgagtttttcactggtttgagacccagtggttccaggattccattgtt 804

                                                         
Query: 605 gactacgggctttctactctccaggaactctttgtgtttggcgtac 650
           ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 805 gactacgggctgtctactctccaggaactctttgtgtttggcgtac 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no117_h01.g1 MSMg01no117_h01.g1 CHROMAT_FILE:
MSMg01no117_h01.g1 PHD_FILE: MSMg01no117_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:00 2005
         (606 letters)



>mm_chr10_113855862_113856867
          Length = 1006

 Score = 1085 bits (561), Expect = 0.0
 Identities = 564/565 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgttcattaattaaaaataattaaatgttgggccccactatttattgatggcatatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgttcattaattaaaaataattaaatgttgggccccactatttattgatggcatatga 506

                                                                       
Query: 61  agctccactgagaggcagtgctgttctcagagaggctcctgtgagcaatatttctcattg 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 agctccactgagaggcagtgctgttctcagagaggctcctatgagcaatatttctcattg 446

                                                                       
Query: 121 tctttgaaaataattaaacccacatttcaatgttaatacaatcactaatgaaaagattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttgaaaataattaaacccacatttcaatgttaatacaatcactaatgaaaagattct 386

                                                                       
Query: 181 tgtactaacagagcaagaagggactttagaacccttggactttagccctgtccaattagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtactaacagagcaagaagggactttagaacccttggactttagccctgtccaattagg 326

                                                                       
Query: 241 atgaaaaacgaagcccaaagcattgaccttgactcactcagaccagaaacaaactcctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaaaaacgaagcccaaagcattgaccttgactcactcagaccagaaacaaactcctag 266

                                                                       
Query: 301 caaaattagttctaagaaatctacttgaaaatagatgaatattttttattaattataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaattagttctaagaaatctacttgaaaatagatgaatattttttattaattataaaa 206

                                                                       
Query: 361 tatatttttaaagtagtggtttattttcattcaatcaatgtaacttttctatggaagatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tatatttttaaagtagtggtttattttcattcaatcaatgtaacttttctatggaagatg 146

                                                                       
Query: 421 ttttatgctttaatattatatcattagtatcatgtctgattattcagtagaagttttatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ttttatgctttaatattatatcattagtatcatgtctgattattcagtagaagttttatg 86

                                                                       
Query: 481 tatgtgttttactctaataataacaagcttgtctttgcaaatgtaattaaatatttgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tatgtgttttactctaataataacaagcttgtctttgcaaatgtaattaaatatttgata 26

                                    
Query: 541 ttccccacgtaaaggcaaaactatt 565
           |||||||||||||||||||||||||
Sbjct: 25  ttccccacgtaaaggcaaaactatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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