BAC Information

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BAC

Clone NameMSMg01-117N14
Chromosome10 (Build37)
Map Location 46,515,223 - 46,515,645
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664781
Downstream geneLOC100041632, LOC668252, LOC100042387, LOC100041663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117N14.T7 (MSMg01no117_n14.b1)MSMg01-117N14.TJ (MSMg01no117_n14.g1)
ACCAG328873AG328874
length707712
length of high quality
(start - end)
---423 (75 - 497)
definitionCHROMAT_FILE: MSMg01no117_n14.b1 PHD_FILE: MSMg01no117_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:31 2005CHROMAT_FILE: MSMg01no117_n14.g1 PHD_FILE: MSMg01no117_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATGCT
AGCCCTGGCCTGAAGTGTACTGTATTGCTACACGACTCGCCCTTTTCCCG
AAGACACAAACTTTCCATAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGA
TTCCTCT
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACACCTCAACAGCAAGGCAGAACATG
GACCCATATTTGGTGCCTAACGTGGGCTACCTTGCTGAAGCATGCCACAG
CTGGAGGCTCATGCAGATCCACATCTGAACTCCAGATTAATCAAACACTG
AGAGTAACCCCAGCCCATAGCCCACAGGCTTTTGGCATTAGCCCAAAAGA
TCCAGGCCTTTCCACCCTAAAGGCAGACACTGTGTCTTCTTCCTTCGTTT
GTTTTCTGGTGGAGCTACTGCACTGACCCCTGTAGATATCCACACTGTCC
AAGGGACCATTAACAAAAAGTCCAGTCCCAACCCCCACTCCAGCCCTGCC
AATATGGTGCCGTTCATATGCTGCTTCTCTTCCTGCTATACTTTTACGCC
TTACAAAAGGCAGCAGACCCCTACATTCCAGCAATACCAGCCAAGAAAAA
ACACAAAAGTGCCTGCCTGGTAGAGCAAATTGTCAACAGCCGAAGCACGG
GAGAACAGGTACTCTCCCTTCACCTAGGTGAAAAGAGCTGATCTTGCATA
ACACCATGGATAAGATCTTGCTACTGAGAATTCAACAAACCACCCAACAT
ACAAACTACCCAACTAACATACCTACCTCCCTTGAATCCCTTAAACCCCC
CAACTTCACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_n14.g1 MSMg01no117_n14.g1 CHROMAT_FILE:
MSMg01no117_n14.g1 PHD_FILE: MSMg01no117_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:31 2005
         (423 letters)



>mm_chr10_46515023_46515845
          Length = 823

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacctcaacagcaaggcagaacatggacccatatttggtgcctaacgtgggctaccttg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acacctcaatagcaaggcagaacatggacccatatttggtgcctaacgtgggctaccttg 564

                                                                       
Query: 61  ctgaagcatgccacagctggaggctcatgcagatccacatctgaactccagattaatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgaagcatgccacagctggaggctcatgcagatccacatctgaactccagattaatcaa 504

                                                                       
Query: 121 acactgagagtaaccccagcccatagcccacaggcttttggcattagcccaaaagatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acactgagagtaaccccagcccatagcccacaggcttttggcattagcccaaaagatcca 444

                                                                       
Query: 181 ggcctttccaccctaaaggcagacactgtgtcttcttccttcgtttgttttctggtggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggcctttccaccctaaaggcagacactgtgtcttcttccttcgtttgttttctggtggag 384

                                                                       
Query: 241 ctactgcactgacccctgtagatatccacactgtccaagggaccattaacaaaaagtcca 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 383 ctactgcactgacccctgtagatatccagactgtccaagggaccattaacaaaaagtcca 324

                                                                       
Query: 301 gtcccaacccccactccagccctgccaatatggtgccgttcatatgctgcttctcttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtcccaacccccactccagccctgccaatatggtgccgttcatatgctgcttctcttcct 264

                                                                       
Query: 361 gctatacttttacgccttacaaaaggcagcagacccctacattccagcaataccagccaa 420
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 gctatacttttaggccttacaaaaggcagcagacccctacattctagcaataccagccaa 204

              
Query: 421 gaa 423
           |||
Sbjct: 203 gaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)