Query= MSMg01no117_o19.b1 MSMg01no117_o19.b1 CHROMAT_FILE:
MSMg01no117_o19.b1 PHD_FILE: MSMg01no117_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:37 2005
(616 letters)
>mm_chr10_42607698_42608712
Length = 1015
Score = 895 bits (463), Expect = 0.0
Identities = 481/489 (98%), Gaps = 5/489 (1%)
Strand = Plus / Minus
Query: 128 cacatatatatgtatatatgtatatgtatgtttaatatatatatattaaaacttcactac 187
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 cacatata----tatatatgtatatgtatgtttaatatatatatattaaaacttcactac 960
Query: 188 cctctttggcttactattcactttccaaatagtatcttgtctgtcttatttatgtgcctt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 cctctttggcttactattcactttccaaatagtatcttgtctgtcttatttatgtgcctt 900
Query: 248 tttattcagtgctgaggactggacctaaggtctgtacatgctagacaagcacactctcac 307
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 899 tttattcagtgctgaggactggacctaaggtctgtacatgctagacaagcacgctctcac 840
Query: 308 tgtgccccacaccacaccagcctctaaatagtgtcttttatcaaacagatgtgttagatg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tgtgccccacaccacaccagcctctaaatagtgtcttttatcaaacagatgtgttagatg 780
Query: 368 tttttttcctggtcattggcttctgcatctaagaaacctatcatactccaagcatgacca 427
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttttttt-ctggtcattggcttctgcatctaagaaacctatcatactccaagcatgacca 721
Query: 428 gtctgctttcttccacctgctgccttgtctcacctcttgcaggctgctgcttacccaatc 487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 720 gtctgctttcttccacctgctgccttgtctcacctcttgcaggctgctgcttaccccatc 661
Query: 488 ttcagttaatgactgtgtggctgtgagtcacccagagcagttcaaaaggctaccttcccc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttcagttaatgactgtgtggctgtgagtcacccagagcagttcaaaaggctaccttcccc 601
Query: 548 ttcctgttgatgttctgcggctcctctctcaaagtctgccaggcccatgaactggcgtct 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 600 ttcctgttgatgttctgcggctcctctctcaaagtctgccaggcccatgaactggagtct 541
Query: 608 atttctgga 616
|||||||||
Sbjct: 540 atttctgga 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_o19.g1 MSMg01no117_o19.g1 CHROMAT_FILE:
MSMg01no117_o19.g1 PHD_FILE: MSMg01no117_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:37 2005
(587 letters)
>mm_chr10_42579132_42580119
Length = 988
Score = 1098 bits (568), Expect = 0.0
Identities = 583/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 1 cttctttcttagtaaggataatgctttgacttaaaaaaa-catcaatttcctgtatctat 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 cttctttcttagtaaggataatgctttgacttaaaaaaaacatcaatttcctgtatctat 260
Query: 60 ttaatttgaggggacaaatttacttcacactacatatgcattcaaattgtaggtcctttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatttgaggggacaaatttacttcacactacatatgcattcaaattgtaggtcctttt 320
Query: 120 taatttttcatactcagtaactggctaagctgtgacccagaccttccaaattagtttaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatttttcatactcagtaactggctaagctgtgacccagaccttccaaattagtttaat 380
Query: 180 gtcagtcctggctacaagcatgctgcctgtccctaaaagcaaacccggtagacagcctgt 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcagtcctggctacaagcatgctccctgtccctaaaagcaaacccggtagacagcctgt 440
Query: 240 atttgtaaaccaggtatcttataagacacacttgagacacatcccatttccccagatgag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgtaaaccaggtatcttataagacacacttgagacacatcccatttccccagatgag 500
Query: 300 tcaagtcagcagcagaaaacctcgactcactttataaaaagaagggaggagaaaaggcgc 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tcaagtcagcagcagaaaacctcgactcactttataaaaagaagggaggagaaaaggcac 560
Query: 360 cttctctggtgtaaactggtttagtggacaggcagtgggtctggaggagagacagcagcc 419
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 cttctctggtgtaaactggtttagtggacaggcagtgggtatggaggagagacagcagcc 620
Query: 420 ctttcccaggcaggtcccaagagtgtttgggcatggagaaacacttccagatgtgcacac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcccaggcaggtcccaagagtgtttgggcatggagaaacacttccagatgtgcacac 680
Query: 480 acagatgtggattaaacgtaggataggcagctttagagctaacaggtacagccacagtgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagatgtggattaaacgtaggataggcagctttagagctaacaggtacagccacagtgt 740
Query: 540 gtcatcagtataggtccacacctctgacaacacacaggctttctgttg 587
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcatcagtacaggtccacacctctgacaacacacaggctttctgttg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
