Query= MSMg01no117_p01.b1 MSMg01no117_p01.b1 CHROMAT_FILE:
MSMg01no117_p01.b1 PHD_FILE: MSMg01no117_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:38 2005
(292 letters)
>mm_chr10_110819858_110820549
Length = 692
Score = 520 bits (269), Expect = e-152
Identities = 281/285 (98%)
Strand = Plus / Plus
Query: 5 gaattcctgtagtccccgtagaaacaagagaaaaatctctttcatcaagtgaaatgtcct 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtagtcccagtagaaacaagagaaaaatctctttcatcaagtgaaatgtcct 264
Query: 65 ctgacatatacacaaacagtgtcatagatatgtgcacaaccatgcacatacatcataaac 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgacatgtacacaaacagtgtcatagatatgtgcacaaccatgcacatacatcataaac 324
Query: 125 acacatgcttcgtacacatacacacattgtctctctgtctcttacacacacacagatcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acacatgcttcgtacacatacacacattgtctctctgtctcttacacacacacagatcat 384
Query: 185 aaatatttaaccaaaaatatgcaacatgaccagttggagtttaggggtcagtgaatcact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatatttaaccaaaaatatgcaacatgaccagttggagtttaggggtcagtgaatcact 444
Query: 245 ctgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 289
|||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 489
Score = 54.9 bits (28), Expect = 6e-12
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 255 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 282
||||||||||||||||||||||||||||
Sbjct: 59 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 86
Score = 54.9 bits (28), Expect = 6e-12
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 257 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 284
||||||||||||||||||||||||||||
Sbjct: 59 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 86
Score = 54.9 bits (28), Expect = 6e-12
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 259 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 286
||||||||||||||||||||||||||||
Sbjct: 59 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 86
Score = 54.9 bits (28), Expect = 6e-12
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 261 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 288
||||||||||||||||||||||||||||
Sbjct: 59 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 5
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no117_p01.g1 MSMg01no117_p01.g1 CHROMAT_FILE:
MSMg01no117_p01.g1 PHD_FILE: MSMg01no117_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:38 2005
(541 letters)
>mm_chr10_110910920_110911860
Length = 941
Score = 845 bits (437), Expect = 0.0
Identities = 507/543 (93%), Gaps = 24/543 (4%)
Strand = Plus / Minus
Query: 2 aagaccactgaaacctcccatttactgatagttttaaaataaatttggcagggcagtggt 61
||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 941 aagaccactgaaacctcccatttactggtagttttaaaattaa------agg-------- 896
Query: 62 atgcacgcctttaatcccagcacttgggaggcagaggcaggtgggtttctgagttccagg 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 -tgcacgcctttaatcccagcacttgggaggcagaggcaggtgggtttctgagttccagg 837
Query: 122 cccgtttggtgtacagaatgagttctaggacagccagggctacacagaaaaaccctgtct 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ccagtttggtgtacagaatgagttctaggacagccagggctacacagaaaaaccctgtct 777
Query: 182 ggaaaccac--ccccc-ccccaccccaccccgcccaaaaaaaaaaaaatcaaaaaacaaa 238
||||||||| ||||| ||||| ||| |||| ||| |||||||||||||||||||
Sbjct: 776 ggaaaccaccacccccaccccatcccgcccccccc------aaaaaaatcaaaaaacaaa 723
Query: 239 aaattgtaaattttaggctctcctcttatccaaagtattctttggatattaagtttggga 298
||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 722 aaaatgtaaattttaggcactcctctaatccaaagtattctttggatattaagtttggga 663
Query: 299 aggtgttttgatggcatctattttcaaaagtggtaaactttatgttggctctcctgaaat 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aggtgttttgatggcgtctattttcaaaagtggtaaactttatgttggctctcctgaaat 603
Query: 359 tagaggtgttgggaaagtctttaaaacgtttctcattttggaatttagagacaggagaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tagaggtgttgggaaagtctttaaaacgtttctcattttggaatttagagacaggagaca 543
Query: 419 gtctgaagtagttagccctggaagacagcctgtatgcctggtgcatccttttagtctggg 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 542 gtctgaagtagttagccctggaagatagcctgtatgcctggtgcatccttttagtctggg 483
Query: 479 aagccctgtcctctggacaggacctgtctccgccctccctccgatgccactcctgagatc 538
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aagccctgccctctggacaggacctgtctccgccctccctccgatgccactcctgagatc 423
Query: 539 ttt 541
|||
Sbjct: 422 ttt 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
