BAC Information

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BAC

Clone NameMSMg01-118M17
Chromosome10 (Build37)
Map Location 60,338,675 - 60,443,293
singlet/doubletdoublet
Overlap genenone
Upstream geneDnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b
Downstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118M17.T7 (MSMg01no118_m17.b1)MSMg01-118M17.TJ (MSMg01no118_m17.g1)
ACCAG329578AG329579
length709713
length of high quality
(start - end)		570 (39 - 608)429 (70 - 498)
definitionCHROMAT_FILE: MSMg01no118_m17.b1 PHD_FILE: MSMg01no118_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:45 2005CHROMAT_FILE: MSMg01no118_m17.g1 PHD_FILE: MSMg01no118_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,442,857 - 60,443,293)(60,338,675 - 60,339,103)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCTC
CCTTGAGCCATGCTCATAGAAATCCTGCCTTATCAGAAATCAACTCCAGC
AAGGACATACTCCTGCTCTAAAGCCTTCTATGGCTCCCCACTGCCCCCTA
CAAAAGGATTAGTGGGATCCTGGTCACACAGGGAAGAGAAGTCATGTTGA
GAAGGTGGGGGTCCGATGACTTCATAAAGGATCTTTAATTTTTATTTATT
TATTTTTTAACAAGAGATGAAACTGAGGCTCAGGGTTGGATAAGCCACCC
ATGGCTACACTGCTAGGTCATGTCTGAGACAGGAGTCACACCAGGTATTT
GTGTCAGAGCCCAAGCTCTTTAACTCTCCAGAAGGAAGAGGTGTGGGGGA
TGGTGTAGCATTAACCTGGTGGCTCCCGGGGCTGCAGTTGCAGCAGAGAA
TGGAGTTATCAGGAGGTGGATCCTAGCCTTGCCCAAAGGACCATGAGCTG
CCAGGAAGGAGAAGGCAGTCTCCACCACAGAAGGCAAACAGGCAGATTCT
CAACAGCCACCTGTGGACATCAGTAGGTGCTCACTGAAGCCAGCGTGGGG
GTCTGTTGGGTGGCCTTCCCTGGAAAGGCACACAGTTTGGCTCCTACACT
CATCATTAGTATAATGCCCCTCCCATGCTTGTCAGCCTGCTCCTTCCTCA
TTCAGTGAG

GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACTAGGGAAATCCCCATGCATGAGTCTGAA
GAGTCTTGGTTCACACCTATCTCTGGTATAGGGTAATATCTTCTGGAAAA
CCTAGACCATAACCAAATTAAGAATTTTCCAGTCCTGTGCAGGCCCATCA
TAATGGGCCTCAGAAGTCCTGGTGTGTCGTAAGTCTGGCTGTCTGTGACT
AGGGAGCACTCCCTCTCTGCCACTTTGGGGTTGTCCCACTAGTAAATATA
CTACCTTTTCTATGTGTCAACATCTTACCTAGCTGAATGGAAAAGTATTT
GCTCAAGATTCCCAAGACCAAGTTCTCAGCAAAAAGGAGATTTATTTACC
CTTAGAGGGACAGAGGGCAGGGAATAAGAGTCAAAGACAGGAGATAGAGG
ACGAGGGAGAAGGAGAAGTGAACAGGGGAGAGGGGAAAAGGGTATTTGTC
TCCTAGGACAAAGGACTACTTCTAGATAGAGAGGAGACAGACATATCACG
TATGCAAATGTTAGCTTGTAAAGGTAAAATGATAAATCCTCATATTACGA
TGAGGTACCTAATTTCAATTTGGTAAAGTAAATTACGTGTACCTAAGGTG
ACTTTTGATTGGTGTACTTCAATACTTTGTTAGCTGGAGTGTGTTAATTA
TTCTCCTCTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_m17.b1 MSMg01no118_m17.b1 CHROMAT_FILE:
MSMg01no118_m17.b1 PHD_FILE: MSMg01no118_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:45 2005
         (570 letters)



>mm_chr10_60442324_60443293
          Length = 970

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 134 ggtcacacagggaagagaagtcatgttgagaaggtgggggtccgatgacttcataaagga 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 ggtcacacagggaagagaagtcatgttgagaaggtgggggtccgatgacttcataaagga 911

                                                                       
Query: 194 tctttaatttttatttatttattttttaacaagagatgaaactgaggctcagggttggat 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 tctttaatttttatttatttattttttaacaagagatgaaactgaggctcagggttggat 851

                                                                       
Query: 254 aagccacccatggctacactgctaggtcatgtctgagacaggagtcacaccaggtatttg 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 aagccacccatggctacactgctaggtcatgtctgagacaggagtcacaccaggtatttg 791

                                                                       
Query: 314 tgtcagagcccaagctctttaactctccagaaggaagaggtgtgggggatggtgtagcat 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgtcagagcccaagctctttaactctccagaaggaagaggtgtgggggatggtgtagcat 731

                                                                       
Query: 374 taacctggtggctcccggggctgcagttgcagcagagaatggagttatcaggaggtggat 433
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 taaccaggtggctcccggggctgcagttgcagcagagaatggagttatcaggaggtggat 671

                                                                       
Query: 434 cctagccttgcccaaaggaccatgagctgccaggaaggagaaggcagtctccaccacaga 493
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 670 cctagccttgcccaaaggaccatgagctgccaggaaggagaaggcagtctccactacaga 611

                                                                       
Query: 494 aggcaaacaggcagattctcaacagccacctgtggacatcagtaggtgctcactgaagcc 553
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 610 aggcaaacaggcagattctcaacagccgcctgtggacatcagtaggtgctcactgaagcc 551

                            
Query: 554 agcgtgggggtctgttg 570
           |||||||||||||||||
Sbjct: 550 agcgtgggggtctgttg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no118_m17.g1 MSMg01no118_m17.g1 CHROMAT_FILE:
MSMg01no118_m17.g1 PHD_FILE: MSMg01no118_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:45 2005
         (429 letters)



>mm_chr10_60338475_60339303
          Length = 829

 Score =  768 bits (397), Expect = 0.0
 Identities = 421/429 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactagggaaatccccatgcatgagtctgaagagtcttggttcacacctatctctggtat 60
           |||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 201 cactagggaaatccccatgcatgagtctgacgagtcttggttcgcaccgatctctggtat 260

                                                                       
Query: 61  agggtaatatcttctggaaaacctagaccataaccaaattaagaattttccagtcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtaatatcttctggaaaacctagaccataaccaaattaagaattttccagtcctgtg 320

                                                                       
Query: 121 caggcccatcataatgggcctcagaagtcctggtgtgtcgtaagtctggctgtctgtgac 180
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcccatcatattgggcctcaggagtcctggtgtgtcgtaagtctggctgtctgtgac 380

                                                                       
Query: 181 tagggagcactccctctctgccactttggggttgtcccactagtaaatatactacctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tagggagcactccctctctgccactttggggttgtcccactagtaaacatactacctttt 440

                                                                       
Query: 241 ctatgtgtcaacatcttacctagctgaatggaaaagtatttgctcaagattcccaagacc 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgtgtcaacatattacctagctgaatggaaaagtatttgctcaagattcccaagacc 500

                                                                       
Query: 301 aagttctcagcaaaaaggagatttatttacccttagagggacagagggcagggaataaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagttctcagcaaaaaggagatttatttacccttagagggacagagggcagggaataaga 560

                                                                       
Query: 361 gtcaaagacaggagatagaggacgagggagaaggagaagtgaacaggggagaggggaaaa 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcaaagacaggagatagaggacaagggagaaggagaagtgaacaggggagaggggaaaa 620

                    
Query: 421 gggtatttg 429
           |||||||||
Sbjct: 621 gggtatttg 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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