BAC Information

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BAC

Clone NameMSMg01-118O11
Chromosome10 (Build37)
Map Location 69,457,323 - 69,516,110
singlet/doubletdoublet
Overlap geneAnk3
Upstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, LOC100039734, 5730416O20Rik
Downstream geneCcdc6, 2310015B20Rik, Slc16a9, LOC632955, 1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118O11.T7 (MSMg01no118_o11.b1)MSMg01-118O11.TJ (MSMg01no118_o11.g1)
ACCAG329656AG329657
length706709
length of high quality
(start - end)		374 (39 - 412)592 (73 - 664)
definitionCHROMAT_FILE: MSMg01no118_o11.b1 PHD_FILE: MSMg01no118_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:53 2005CHROMAT_FILE: MSMg01no118_o11.g1 PHD_FILE: MSMg01no118_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,457,323 - 69,457,689)(69,515,761 - 69,516,110)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCT
ACCTACCTGCCGATTCCTGATAGCAACTGTACACTCTTAGTGTTTTCTGT
ATAGATACAATAAGAGGATATAAAATTACGTCTTATTTTATTTTAAACCC
TTTCTTCGCGGGGCCATTTCCATAAAAGAATAGTCTTGTATTTGAGGGCG
CATGCCTTTGGAGCATAGAAGAAAACCCAGCTAAGACTACATAACTAGGA
TGTTCCATTGTTAAAACTGAACTCTTGCCGGGCGGTGGTGGCGCACACCT
TTAATCCCAGCACTTGTGAGGCAGAGGCAGGTGGATTTCAGAGTTCAAGG
CCAGCCTGGACTAGAGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACC
CTGTCTCGAACACCAAACAAGCAAACAACAACAACAAAACTGCACTCTTA
GCAAATGGCTTGATTACCCCCTGCCCTGGTCTAGGCAGTTGTAGACACGT
CCCTTAGCCTCCCTAGACTATGGTATCTACCCAATCACTATGCCTTTCGC
GGACTGATGCTTTTAAATGAACTTCCCATCATGCTTCAGGATTTGTTTAT
AAGGAATACCTTGTCTTACTTTGAACTCCTAGAGCAAACGCTATTGTTGA
TACTTTCTAGGACCAGGGACACCAAGTATCGAAAAGTTTTGATTACTACC
TACTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTATATTTCCTAGTTTGTTGTTGTTTTT
TATTTTCTCTCCTTTGTCCCTTATTTTGCATTTGAGCAAATGCTCTTTGC
TTTGTTTAAGTTAAGAGAGCCCAAGAAAGACTTTCCTTGGAGGATTTAAG
TGCTACTGAAAGGCTGGGGATGTAGCAAACACAAAGCTCTAAGTTCCATA
CCTAGCTTCTCCTATCCTAGGATGTGGTAGTGAACACTTACAATTTTAGT
AGGAGGCTCAGAAGCTCAAAGCCATCTTCAGCTACATAAGTTCAAGGCCA
GCCTAGGATCTGAGACCCTGTCTATAAGAGAGCAAGTGAGATACACACAT
ACACACACATACATACATACATAGGTAGATATATACATAGATAGTATATA
CATAGATACATAAATAAACACATATACAGATATTTAGATAGATACATAGA
TAAGATAGACACATGGATAGGTATATCCATACATATATGCATAGATACAT
AAATACATAGGTAGATAGGTAGGCAGATAGATAGATGATATATAGATGGA
TAGAGTTGAGAAATACCAGTGAAGCCAGGTATGGTAGAACCTAGCTTTAA
TCCTAGTACCCCTGAAGCAGAGGCAATTGAGTCTTTGTGAGTTTGAAGAC
AGCCTAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_o11.b1 MSMg01no118_o11.b1 CHROMAT_FILE:
MSMg01no118_o11.b1 PHD_FILE: MSMg01no118_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:53 2005
         (374 letters)



>mm_chr10_69457118_69457891
          Length = 774

 Score =  609 bits (315), Expect = e-179
 Identities = 354/367 (96%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctacctacctgccgattcctgatagcaactgtacactcttagtgttttctgtata 65
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctacccacctgacgattcctgatagcaactgtacactcttagtgttttctgtata 265

                                                                       
Query: 66  gatacaataagaggatataaaattacgtcttattttattttaaaccctttcttcgcgggg 125
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||
Sbjct: 266 gatacaataagaggatataaaattacatcttattttattttaaaccctttcttcatgggg 325

                                                                       
Query: 126 ccatttccataaaagaatagtcttgtatttgagggcgcatgcctttggagcatagaagaa 185
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 326 ccatttccataaaagaatagtcttgtatttgagggcacatgcctttggagcatagaataa 385

                                                                       
Query: 186 aacccagctaagactacataactaggatgttccattgttaaaactgaactcttgccgggc 245
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 386 aacccagctaagactacataactaggatgtcccattgttaaaactgaattcttgctgggc 445

                                                                       
Query: 246 ggtggtggcgcacacctttaatcccagcacttgtgaggcagaggcaggtggatttcagag 305
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 ggtggtggcgcacacctttgatcccagcacttgggaggcagaggcaggtggatttcagag 505

                                                                       
Query: 306 ttcaaggccagcctggactagagagttccaggacagccagggctatacagagaaaccctg 365
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcaaggccagcctggacttgagagttccaggacagccagggctatacagagaaaccctg 565

                  
Query: 366 tctcgaa 372
           |||||||
Sbjct: 566 tctcgaa 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no118_o11.g1 MSMg01no118_o11.g1 CHROMAT_FILE:
MSMg01no118_o11.g1 PHD_FILE: MSMg01no118_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:54 2005
         (592 letters)



>mm_chr10_69515761_69516752
          Length = 992

 Score =  677 bits (350), Expect = 0.0
 Identities = 350/350 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatatttcctagtttgttgttgttttttattttctctcctttgtcccttattttgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttatatttcctagtttgttgttgttttttattttctctcctttgtcccttattttgcatt 291

                                                                       
Query: 61  tgagcaaatgctctttgctttgtttaagttaagagagcccaagaaagactttccttggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgagcaaatgctctttgctttgtttaagttaagagagcccaagaaagactttccttggag 231

                                                                       
Query: 121 gatttaagtgctactgaaaggctggggatgtagcaaacacaaagctctaagttccatacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gatttaagtgctactgaaaggctggggatgtagcaaacacaaagctctaagttccatacc 171

                                                                       
Query: 181 tagcttctcctatcctaggatgtggtagtgaacacttacaattttagtaggaggctcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tagcttctcctatcctaggatgtggtagtgaacacttacaattttagtaggaggctcaga 111

                                                                       
Query: 241 agctcaaagccatcttcagctacataagttcaaggccagcctaggatctgagaccctgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 agctcaaagccatcttcagctacataagttcaaggccagcctaggatctgagaccctgtc 51

                                                             
Query: 301 tataagagagcaagtgagatacacacatacacacacatacatacatacat 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  tataagagagcaagtgagatacacacatacacacacatacatacatacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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