BAC Information

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BAC

Clone NameMSMg01-118O15
Chromosome10 (Build37)
Map Location 112,451,486 - 112,452,071
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2, LOC100042639, 4921506J03Rik
Downstream geneLOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118O15.T7 (MSMg01no118_o15.b1)MSMg01-118O15.TJ (MSMg01no118_o15.g1)
ACCAG329663AG329664
length706707
length of high quality
(start - end)
617 (40 - 656)572 (70 - 641)
definitionCHROMAT_FILE: MSMg01no118_o15.b1 PHD_FILE: MSMg01no118_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:54 2005CHROMAT_FILE: MSMg01no118_o15.g1 PHD_FILE: MSMg01no118_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCT
TTGTTTATCCCTGAGCCTCATTTTTAATGGGGTTATTTGATTTTCTGGAG
TCTACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGA
TTTAGAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCC
CATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATCCAG
GAAGTTTTCCCCTGTGCCCATCTCTTCGAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTCATGTGGAGTTCCTTAATCCACTTC
TTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCGCATTCTTCTAC
ATGATAACCACCAGTTGTGCCAGCACCATTTATTTAAAATACTGACTTTT
TTCCACTGGATGGTTTTAGCTCCCTTGGCGAAGATCAAGTGACCATAGAT
GTGTGGGTTCATTTCTGGGTCTTCAATTTTATTCCATTGGTCTACTTGTC
TGTGGCTATAACAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGGTC
AGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTGATCCTTGAG
AAGAGT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACCCAGGTTCTTTGGAAAAACAGCCCCTGCT
GCTAACTGCTAATTAATCTCTCCAGGTCCATTTGTTTTAATTTTGTACAC
TTTAATATATTTTTATGAGGATTTAATTTAATCTAATCTAATCTACAAGT
TAACACCCAGGTTAGTTTATGAATAAAATTAATCCCACATTTAATAAGGA
GACACTGGAGCTTAAATATGTATTCATACCCAAAGACCTCTTAAGTGAGA
AAAAATGTAGAGTACTAACAGATGTCTCTGTGTGATCAGATACTTAAAAT
TTTATGTATATGTTTTGGGGATGTGTGCTTGTGCATACATGACAGCAAGG
TCAGAATTAGAAGCAAGTGTTATGTACCCTAGCAGCGGCGTTAATGACAG
TTGGGAAAGACTCTACTTGAGTAATGGCAACAGCAATATGGTCCCATGTA
GGAGCAGTACACTGGTCAACAATATCTTTATCCTACATTCTGCTTCTTAC
AGGAATAAATCATAGGTCAGTGGTGGAACAGAGATGGGACATGGGACATG
CCCTTTGAAGGTACTCAGTAGACCAAAACATTACATGACCATAAATCTAT
CCAATTGTGAATATTTTATTAGAGCACAGGATGTGACCCTACACGGACAC
CTCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_o15.g1 MSMg01no118_o15.g1 CHROMAT_FILE:
MSMg01no118_o15.g1 PHD_FILE: MSMg01no118_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:54 2005
         (572 letters)



>mm_chr10_112451296_112452271
          Length = 976

 Score =  990 bits (512), Expect = 0.0
 Identities = 561/592 (94%), Gaps = 26/592 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccaggttctttggaaaaacagcccctgctgctaactgctaattaatctctccaggtcc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 191 acccaggttctttggaaaaacagcccctgctgctaagtgctaattaatctctccaggtcc 250

                                                                       
Query: 61  atttgttttaattttgtacactttaatatatttttatgaggatttaatttaatctaatct 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 251 atttgttttaattttgtacacttta-tatatttttatgaggatttaatttaatctaatct 309

                                                                       
Query: 121 aatctacaagttaacacccaggttagtttatgaataaaattaatcccacatttaataagg 180
           |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 a-----caagttaacacccaggttagtttatgaataaaattaatcccacatttaataagg 364

                                                                       
Query: 181 agacactggagcttaaatatgtattcatacccaaagacctcttaagtgagaaaaaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agacactggagcttaaatatgtattcatacccaaagacctcttaagtgagaaaaaatgta 424

                                                                       
Query: 241 gagtactaacagatgtctctgtgtgatcagatacttaaaattttat-------------- 286
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 425 gagtactaacagatgtctctgtgtgatcagatacttaaaattttatatatttaaaatgtt 484

                                                                       
Query: 287 --gtatatgttttggggatgtgtgcttgtgcatacatgacagcaaggtca----gaatta 340
             ||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 485 atgtatatgttttagggatgtgtgcttgtgcatacatgacagcaaggtcattcagaatta 544

                                                                       
Query: 341 gaagcaagtgttatgtaccctagcagcggcgttaatgacagttgggaaagactctacttg 400
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 545 gaagcaagtgttatgtaccctagcagcggcattgatgacagttgggaaagactctacttg 604

                                                                       
Query: 401 agtaatggcaacagcaatatggtcccatgtaggagcagtacactggtcaacaatatcttt 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agtaatggcaacagcaatatggtcccatgtaggagcagtacactggtcaacaatatcttt 664

                                                                       
Query: 461 atcctacattctgcttcttacaggaataaatcataggtcagtggtggaacagagatggga 520
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 665 atcctacattctgcttcttacaggaataaatcacaggtcagtggtggaacagagatggga 724

                                                               
Query: 521 catgggacatgccctttgaaggtactcagtagaccaaaacattacatgacca 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 catgggacatgccctttgaaggtactcagtagaccaaaacattacatgacca 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 976
Length adjustment: 10
Effective length of query: 562
Effective length of database: 966
Effective search space:   542892
Effective search space used:   542892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)