BAC Information

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BAC

Clone NameMSMg01-119O11
Chromosome10 (Build37)
Map Location 70,987,233 - 70,987,441
singlet/doubletsinglet
Overlap genenone
Upstream gene1200015N20Rik, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860
Downstream geneLOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119O11.T7 (MSMg01no119_o11.b1)MSMg01-119O11.TJ (MSMg01no119_o11.g1)
ACCAG330407AG330408
length919716
length of high quality
(start - end)
---209 (71 - 279)
definitionCHROMAT_FILE: MSMg01no119_o11.b1 PHD_FILE: MSMg01no119_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:11 2005CHROMAT_FILE: MSMg01no119_o11.g1 PHD_FILE: MSMg01no119_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAGAAGGCG
CGNCAATTCATCTCTGTATACCCAGGTTGGCCCCAAACTCTAGGTCCATT
CTGCCTCTCGTCTCCTCGAATGCTCGGGATTAATCGGTGTGTAGCCACTA
TTCATCTGCGCTTACAGCGAAGTGCATTTCATTCTCGCCTGCGCATTACA
CTTCTCATTCTCCTACTCGGTGCTGTTACTGTCTTATACCCCGCATTCAT
GATGCTATTCCTGCTACAGTGTGCCCTCCTAACGTCCTTTATTTACCTTG
TCTCTCTCGTCTTACCTCATACATGCTGTATTGCTCGTCACGTATCTCAT
CAATCGTAGACCAATCATCTCTCCCAGTGAATCTTTGATTATCAATAAGC
TAGCCCTACATTTTCTACTGTACCGTTCCCTATACCGTTTTAGTTCTACC
GACAGCGAACAAAAACACCCTCTTTTACTTATTTAACTCCTTACCTCATA
CGTCCATCTCGTTACTCCCATCGTTCACCTTCCTTACCCCCTCCATTCGT
ACTACACTGCGCGACTCCCGCATGTTAGCTGCACCCACATAACCTTTTTA
CTCTTGTTTTCCCCTCTTCCCCACCCATTCGTTTCACCGTATTCCGCCTT
TTTCTATCCCCTATCTCCCATACCCCCTATTTTCCCATTATACCTTCAAT
TTTCCGCCCGTTTCTAATTACCCTTATTCACTCATCCCTTTCACTCTCCT
TTTCGCCCCCGTTCTTCCACCTTTCCTTATTACCCCACCATATTATCCCG
CCCTTCCTCTTTCTTCCCCTTCGCCTTCCCCCTTTTTTACCCCCTTATTG
CGACCTCGTGACCTGCTCCCGAATAACTATCCGCCTCTATTTCCCCTTTT
TGTTCTTTTGTTTCCCGCC
TTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAGCTACATAAGATGCAAAAAGAGATTGG
TTTATAAAATAAAATTCTGCATGCAAAACAAAACCCAGCTGCTTACATTG
AAGGGGTATTTTTATATAAACATATGATATAAGGCATAAAGTATATGTGT
AAATTTACACATGCATTCTACAAGCATATTTATATAGCTACTTCCTGTAA
CGTACCTCAGGACTTTCCTCCTGACATTTCCCCACATACATTGCATTGCT
AAGGACCTTTAGAATTACCATTATTAAAAACTTTCCCACCTCTTGCTTTT
CTTGCTTAAGTTCTCACTCGAACATTCCATATGCCTAAGCCGTGAAAAAG
ACCTCCAGCCACGTTCTCAATCCATGGTCATCACTGATAGTAAACATGAG
CATCTTTCTCTACACTCTCTTTTCTATTCTCTCTCTCCCTCTGATACCTC
ATAGTCTATAACGACGCCCAATCATACAGCGCAAGCAACTCCTGCTTCTG
CTGACCACCATGTACTCTTTATGCCTATCATCCCCCATGCCGTATCTCCT
AGACATCCCCGACATCTTTCTTGTTCTGAATGACATGCACATCCGCCTCC
CGCTACAGTTTCCCCCATAAGGCATCTTTTTTCTGCTCTTCCCACGCCGC
CCGATTTTGTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_o11.g1 MSMg01no119_o11.g1 CHROMAT_FILE:
MSMg01no119_o11.g1 PHD_FILE: MSMg01no119_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:11 2005
         (209 letters)



>mm_chr10_70987033_70987641
          Length = 609

 Score =  404 bits (209), Expect = e-117
 Identities = 209/209 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagctacataagatgcaaaaagagattggtttataaaataaaattctgcatgcaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atagctacataagatgcaaaaagagattggtttataaaataaaattctgcatgcaaaaca 350

                                                                       
Query: 61  aaacccagctgcttacattgaaggggtatttttatataaacatatgatataaggcataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaacccagctgcttacattgaaggggtatttttatataaacatatgatataaggcataaa 290

                                                                       
Query: 121 gtatatgtgtaaatttacacatgcattctacaagcatatttatatagctacttcctgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtatatgtgtaaatttacacatgcattctacaagcatatttatatagctacttcctgtaa 230

                                        
Query: 181 cgtacctcaggactttcctcctgacattt 209
           |||||||||||||||||||||||||||||
Sbjct: 229 cgtacctcaggactttcctcctgacattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)