BAC Information

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BAC

Clone NameMSMg01-120A01
Chromosome10 (Build37)
Map Location 90,735,270 - 90,735,793
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120A01.T7 (MSMg01no120_a01.b1)MSMg01-120A01.TJ (MSMg01no120_a01.g1)
ACCAG330480AG330481
length726700
length of high quality
(start - end)
164 (74 - 237)524 (77 - 600)
definitionCHROMAT_FILE: MSMg01no120_a01.b1 PHD_FILE: MSMg01no120_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:18 2005CHROMAT_FILE: MSMg01no120_a01.g1 PHD_FILE: MSMg01no120_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATATTTGCGGCGCTAAACGACTCCTATATTTCAAAATCCGCG
GAATTCACAGCATAACTGCGGCTTCATAGAATAAATTGGGTAGTGTTCTT
TCTATTTTGTGGAGTAGTTTGAAGAGTATTGGTATTAGGTCTTCTTTGAA
GGTCTGATAGGATTCTGCACTAAGCCCATCTAGTCCTGGGCGCTTGTTGT
TTGGTTGTTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGCACACCCACAC
CAATTTACCTCGTCCATTTTCGTTGCCCTATCATTTGATCATGTTCCCTT
TCCCTCTTACCTTCTCGATATTTTTCTTTTCCGTGTCCCCTCTTTTTCGA
TCTTTTCACGATTCGTTCGCTACACCCCCAAATTGTAAATTTACATAACA
CCCTGCCAATTTTATCTTCCCCTCCTATTCTGTTAAACTTTAACCCTTCT
GCTTTTCCATTTTTTACCTATCCCCTACCACTTTATCTTACACCCTCCCC
CTTTTATTTATCGCGCTCTCCATCTTTCCATTTCTCTTCTCTCCTCCTTC
CCCTATTTTCCTTTCCTCTTCCCTTCATATCCTTCTCTCCCCATTCCCAA
CCCTTATTTTATTCCGCCTCCCACCTTTAATTCATTTTCCTCCCCAAACC
CTCCCCTTCCCCCCATTAAGCATTGTTCTTGCGGTCTTTTCCATACTGTG
CCCCTCCCACATTTTCCTCCCCCTCA
NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAAATTGTGACATGTCAGCGC
AGAATGCCTTCCAGAGCCTCCCTACGCCGGCTTAAACCACTGCGGCTGAC
TTTTCTTGCTTAAGAGGAAATCTTGAGGTGAGGGGCTGCTGGCATTGCTT
AGCTGCTCCATGATGCAATCAAAGCTCCAAGGTACATAGATGCACACATA
CATATATGTATATATGCACATATATACATACATATACATATTTGTATACA
CATACACACATTTATTTGTATATACACATATACATACACATATAAATATT
TGTACATACATATACACATACATATATTTGTATATACATATATACATAAA
TATACACATATTTGTATATACATATGCACACATATACATACATAAACACA
TAATGTTTGTATATACATACATAATACACACATATGTATTGCGTCCCTCA
TTCCTAGTGTGCTGATTTTTATTCTCAGGCTGTGACCAACCACATAATCA
AAGTGACTTTCACAGATCCAAGTAACGGAAGTATTTGTAATGATCAGCTT
GGAATTCTTCTTTGCGTCTCTCTGTTTCCTCCTCCTCCCTTCTTTTCGGA
CAGTGCTGAAAACTGAACTCAGCACCTCATGCCAGGCAAGGTCCCTTTCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_a01.g1 MSMg01no120_a01.g1 CHROMAT_FILE:
MSMg01no120_a01.g1 PHD_FILE: MSMg01no120_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:18 2005
         (524 letters)



>mm_chr10_90735070_90735993
          Length = 924

 Score =  982 bits (508), Expect = 0.0
 Identities = 520/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaaattgtgacatgtcagcgcagaatgccttccagagcctccctacgccggcttaaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgaaattgtgacatgtcagctcagaatgccttccagagcctccctacgccggcttaaa 260

                                                                       
Query: 61  ccactgcggctgacttttcttgcttaagaggaaatcttgaggtgaggggctgctggcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccactgcggctgacttttcttgcttaagaggaaatcttgaggtgaggggctgctggcatt 320

                                                                       
Query: 121 gcttagctgctccatgatgcaatcaaagctccaaggtacatagatgcacacatacatata 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gcttagctgctccatgatgcaatcaaagatccaaggtacatagatgcacacatacatata 380

                                                                       
Query: 181 tgtatatatgcacatatatacatacatatacatatttgtatacacatacacacatttatt 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatatatgcatatatatacatacatatacatatttgtatacacatacacacatttatt 440

                                                                       
Query: 241 tgtatatacacatatacatacacatataaatatttgtacatacatatacacatacatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtatatacacatatacatacacatataaatatttgtacatacatatacacatacatata 500

                                                                       
Query: 301 tttgtatatacatatatacataaatatacacatatttgtatatacatatgcacacatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtatatacatatatacataaatatacacatatttgtatatacatatgcacacatata 560

                                                                       
Query: 361 catacataaacacataatgtttgtatatacatacataatacacacatatgtattgcgtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 catacataaacacataatgtttgtatatacatacataatacacacatatgtattgtgtcc 620

                                                                       
Query: 421 ctcattcctagtgtgctgatttttattctcaggctgtgaccaaccacataatcaaagtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcattcctagtgtgctgatttttattctcaggctgtgaccaaccacataatcaaagtga 680

                                                       
Query: 481 ctttcacagatccaagtaacggaagtatttgtaatgatcagctt 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttcacagatccaagtaacggaagtatttgtaatgatcagctt 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)