BAC Information

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BAC

Clone NameMSMg01-120C02
Chromosome10 (Build37)
Map Location 38,988,841 - 38,989,302
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964
Downstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120C02.T7 (MSMg01no120_c02.b1)MSMg01-120C02.TJ (MSMg01no120_c02.g1)
ACCAG330574AG330575
length688774
length of high quality
(start - end)
466 (47 - 512)486 (138 - 623)
definitionCHROMAT_FILE: MSMg01no120_c02.b1 PHD_FILE: MSMg01no120_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:28 2005CHROMAT_FILE: MSMg01no120_c02.g1 PHD_FILE: MSMg01no120_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTCCTATATCCAGAGGATGCGCGGAATTCCAGTCCTCTTCCCAGCAGA
GAGGGAGCAGTCCGGGGTCTCTGGGCCTCAATGGAGGCCAGAAACAACAG
GTTCTCAGTCTTGGACATCCCAGACCGCTGTATGTCGCAGAAGAGCTAAG
AACAAAGTGAGGGCCCTGGGTGCAGCTTGGTCAGCCCAGGGCTGAAAGAA
GAAGAGGGCAGGGGTAGAGGGTGTGCTGGGTGGTTCCCACGTGGGCGAGA
GCCCTTGGTCCGGTCCATGGCTGGAGTGCAGGAAGGACTAAGGATGGGAG
ATTAAACGTGGAGAAGGCCTATCCCATCGTGCAAGTGCTGCAGGCCTTGA
TGAGCAGAGATGGTCCATGGTTTTAGAGCTTTATTGTATAAAGGCAGAGA
GAAAGAGAGAAGGTAGAGAGAAGTGGGCCATGGCCACATGGAGAGAAGGG
GGAAGGGAGGGGGAGAAGGAGAGCTAGAGATGAATGAGAGGTAAGAGCTT
AAGATAGAGAGGAGGAGCCAAGCAGCCCCTTTCTTAGTGAGCGGGGCTAT
CTTGCAGTTGCAGGGTAACTGTGGGGAGGAACATACCTGGTTACAGTCAG
GTAACTGGCCAGAATGCCCAGAGCTTGCGACTTCGTGTTCGCGACTGATA
ATCTCATTATGGAATTGAGGTTCTCATGGTGTCAGTTG
AAAAAAAAAAAAAAGAAGAGNGNCGCCCCGTTGTGTATACAANACCCCTT
CACCACATANNTCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGTAGTTACC
TTATTTTTTGGTTATCAGTTCATTCCTCTCTTCTTCCTTTCTCTGAATTT
CTTTTCCTTTCTCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTGTTTTTTGTCTTTCAAGTCACA
TATATGTTTGGAGTAACTACTGTGTTAGACTATGTGACTAGCACCATCTC
AACCTCGATCTATACAAATAGATCAAATAAAATGTTATGGACCAAATGTG
AAATAGTTATAAACCTAGAAAGGAAGACTTACATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATCTCAGATTATTATTAAGTCCAATA
TCAAACTGTATTCTAATTTAATTTCAAGTAAACACAAGAAATTTTGTGTA
ATATTGCAAGTCCAGTGTAAACAGTAACATATATTGCACAGAAACATTGT
ATGTGCATCACACTGAATTTCTAATAAACTGTGAAATGTATTATTTATGC
CTCCAGTACAAAATTTAAAACACTGCGTTTGATGCCATCACGACTAAAAT
GCCTCATGCCAGTTAGTTTCTTGTGACCCATCTTTCAATTTTCTTTCTAA
TTTTTAAAAAAAATAATGGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_c02.g1 MSMg01no120_c02.g1 CHROMAT_FILE:
MSMg01no120_c02.g1 PHD_FILE: MSMg01no120_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:28 2005
         (486 letters)



>mm_chr10_38988629_38989514
          Length = 886

 Score =  801 bits (414), Expect = 0.0
 Identities = 457/486 (94%), Gaps = 24/486 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgtagttaccttattttttggttatcagttcattcctctcttcttcctttctctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 acttgtagttaccttattttttggttatcagttcattcctctcttcttcctttctctgaa 272

                                                                       
Query: 61  tttcttttcctttctcttcctttctttctttctttctttctttctttctttctttctttc 120
           ||||||||||||||||||            ||||||||||||||||||||||||||||||
Sbjct: 273 tttcttttcctttctctt------------tctttctttctttctttctttctttctttc 320

                                                                       
Query: 121 tttctttctttctttctttctgttttttgtctttcaagtcacatatatgtttggagtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctttctttctttctttctgttttttgtctttcaagtcacatatatgtttggagtaac 380

                                                                       
Query: 181 tactgtgttagactatgtgactagcaccatctcaacctcgatctatacaaatagatcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgtgttagactatgtgactagcaccatctcaacctcgatctatacaaatagatcaaa 440

                                                                       
Query: 241 taaaatgttatggaccaaatgtgaaatagttataaacctagaaaggaagacttacataat 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaatgttatggaccaaatgtaaaatagttataaacctagaaaggaagacttacataat 500

                                                                       
Query: 301 aataataataataataataataataataataataataatctcagattattattaagtcca 360
           |||||||||||||||||||||||||||            |||||||||||||||||||||
Sbjct: 501 aataataataataataataataataat------------ctcagattattattaagtcca 548

                                                                       
Query: 361 atatcaaactgtattctaatttaatttcaagtaaacacaagaaattttgtgtaatattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atatcaaactgtattctaatttaatttcaagtaaacacaagaaattttgtgtaatattgc 608

                                                                       
Query: 421 aagtccagtgtaaacagtaacatatattgcacagaaacattgtatgtgcatcacactgaa 480
           ||| ||||  |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 609 aagcccagcataaacagtaacatacattgcacagaaacattgtatgtgcatcacactgaa 668

                 
Query: 481 tttcta 486
           ||||||
Sbjct: 669 tttcta 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)