BAC Information

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BAC

Clone NameMSMg01-120D13
Chromosome10 (Build37)
Map Location 53,820,608 - 53,821,247
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
Downstream geneLOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120D13.T7 (MSMg01no120_d13.b1)MSMg01-120D13.TJ (MSMg01no120_d13.g1)
ACCAG330642AG330643
length706707
length of high quality
(start - end)
630 (68 - 697)278 (376 - 653)
definitionCHROMAT_FILE: MSMg01no120_d13.b1 PHD_FILE: MSMg01no120_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:35 2005CHROMAT_FILE: MSMg01no120_d13.g1 PHD_FILE: MSMg01no120_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCG
CGGAATTCAGTATCCAATGATAAACACTTCTAGGCTGGCCTGGTGCCTTG
TGCAACCACAGCTCTTGGGCTGTTGATGCAGGATTGCTCTTAGCTAAAAG
GTGGATTAGAATACATATTGAAGCCTTGTCTCGGACAAATTAAAAAAAAA
AGAAAAGAAAAGAAAAAGAAAAGGAGGGATTCTTCTTCTTTTTTTAGAAA
AAATCAAGAAGTTTATTGGTAAAATTATTGTTTTAGTAAGTGTAATTTGA
GAAGGTTTACAGACACATTCACCTTCTTAAAATAAAGAGGTTACATAAAG
ACTTCCATGATTTTCTGGAACACACTTAGTAAAATTAACAGCTCAGTTTG
CTTTGTCAACTTGTGTTTTATTTCCCCCAAACAGGATTAAAATGCTGGCC
CAGACAGCTGGCTAGTTGATAAGCTTGCTAAAGACCTCAATGGGTGCTTA
AATATTCTCCGCTTACCTTTGCTTCTTCTCATGTAAGATACAAGACAGAC
AAGTCCTCTTACTTTACTCCTTTGGAGAGGATTTCTGTGTGTCTATGTAT
ACATACATACACACATACATACATACATACATGCATGCATGCATACATAT
TCCATCAGTCAGTTTCTGTAGAGGAACCCTGACTAGTACAAATGGGGTAT
TTTATN
CACGATGCAGTGGGTAGGCGGGAGGNCGCCTTTCGTAGGGAGGGAGGNGA
CCTATAGATGGCAAAAAAGAATCAATAACTCACTTAAAGAAATACAGGAG
AACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGC
TAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGG
TAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAA
ATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAA
AACCCAAAGTGAGGTTTCGTCTTTAGATAGAAACCCTAGGAAAGAAATCT
GGAACCATATATGCCAGCCTCAGCAACAGAATACAAGAGATGGAAGAGAG
AATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAATCAAAG
AAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAG
GACAGAATGAGAAGACCAAACCTATGGATAATAGGAGTGGATGAGAATGA
AGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAG
AAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCC
TACTGAACTCCTAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACAT
AATAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_d13.b1 MSMg01no120_d13.b1 CHROMAT_FILE:
MSMg01no120_d13.b1 PHD_FILE: MSMg01no120_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:35 2005
         (630 letters)



>mm_chr10_53820418_53821447
          Length = 1030

 Score = 1100 bits (569), Expect = 0.0
 Identities = 618/643 (96%), Gaps = 16/643 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgataaacacttctaggctggcctggtgccttgtgcaaccacagctcttgggctgttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgataaacacttctaggctggcctggtgccttgtgcaaccacagctcttgggctgttgat 250

                                                                       
Query: 61  gcaggattgctcttagctaaaaggtggattagaatacatattgaagccttgtctcggaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 251 gcaggattgctcttagctaaaaggtggattagaatacatattgaagccctgtctcggaca 310

                                                                       
Query: 121 aatt-------aaaaaaaaaagaaaagaaaagaaaaagaaaa------ggagggattctt 167
           ||||       |||||||||||||||||||||||||||||||      ||||||||||||
Sbjct: 311 aatttaaaaaaaaaaaaaaaagaaaagaaaagaaaaagaaaaagaaaaggagggattctt 370

                                                                       
Query: 168 cttctttttttagaaaaaatcaagaagtttattggtaaaattattgttttagtaagtgta 227
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctt---tttttagaaaaaatcaagaagtttattggtaaaattattgttttagtaagtgta 427

                                                                       
Query: 228 atttgagaaggtttacagacacattcaccttcttaaaataaagaggttacataaagactt 287
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 428 atttgagaaggtttacagacacattcaccttcttacaataaagaggttacataaagactt 487

                                                                       
Query: 288 ccatgattttctggaacacacttagtaaaattaacagctcagtttgctttgtcaacttgt 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 488 ccatgattttctggaacacacttagtaaaattaacagctcagtttgctttgtccacttgt 547

                                                                       
Query: 348 gttttatttcccccaaacaggattaaaatgctggcccagacagctggctagttgataagc 407
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 548 gttttatttcccccaaacaggattaaaatgctggcccagacagctgcctagttgataagc 607

                                                                       
Query: 408 ttgctaaagacctcaatgggtgcttaaatattctccgcttacctttgcttcttctcatgt 467
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 608 ttgctaaagacctcagtgggtgcttaaatattctccccttacctttgcttcttctcatgt 667

                                                                       
Query: 468 aagatacaagacagacaagtcctcttactttactcctttggagaggatttctgtgtgtct 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aagatacaagacagacaagtcctcttactttactcctttggagaggatttctgtgtgtct 727

                                                                       
Query: 528 atgtatacatacatacacacatacatacatacatacatgcatgcatgcatacatattcca 587
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtgtatacatacatacatacatacatacatacatacatgcatgcatgcatacatattcca 787

                                                      
Query: 588 tcagtcagtttctgtagaggaaccctgactagtacaaatgggg 630
           ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 788 tcagtcagtttctgtagaggaaccccgactagtacaaatgggg 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)