BAC Information

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BAC

Clone NameMSMg01-120F12
Chromosome10 (Build37)
Map Location 40,446,796 - 40,447,098
singlet/doubletsinglet
Overlap gene9030224M15Rik
Upstream geneE130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo
Downstream geneCdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F12.T7 (MSMg01no120_f12.b1)MSMg01-120F12.TJ (MSMg01no120_f12.g1)
ACCAG330735AG330736
length718770
length of high quality
(start - end)
325 (45 - 369)95 (56 - 150)
definitionCHROMAT_FILE: MSMg01no120_f12.b1 PHD_FILE: MSMg01no120_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:45 2005CHROMAT_FILE: MSMg01no120_f12.g1 PHD_FILE: MSMg01no120_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAGAGGATCCGCG
GAATTCCATTTTTCCAAATTTGGGAAAGGCATTGTGTTGATGTGGAGAAT
TAAGATGAATGGTAATTGAAAGAGAAGATAAAAGCAAGTGGTTTCCATGG
GGAAATAATCACGACCTGCTGTCAGATTGATTCCAATAAGAACACTGCTT
TATGTGAAATGTTTTTTAAACAGCTAAACCAAAGCAGTATGTGAGAGCTC
ATCTGAGAGCGTGTATTGCTGTCTGTGTGCTGTTATTAGACCTCCGTCTG
AGATTCCTTGACGTGCATTATTCACCAGCACAGCTGTGTTTTAGCTTCTT
TGTGGTCAACTCTCAGCTGGAAATGAGGAGTATCAGGTTGCAGACAGATA
ATCCTATATTTAACAAGATGGATTCACAACTACCAATGCGTGAAGTAACT
CCTGTGCGCTAGCCCTGGCTTAATGCTGGTGCTGAGTCTGACGTGTCCCT
GTAATGTTTCCCAAACACCTTGCTGCGTTTGGAAGCTTTCAGCAATAGAA
ATTCTTCCCCGCGATCTGTATCCCAATTTTTTTGTGCATCTTTTGCGACT
AATCCTTAAAGACGTCATTCCCTTGCGCCCCCTATTGCATCCCCTAGTGC
AATTCCCTCTCAAGACCCCAAACAATTTTCTTGCCTTCGCCTGAATGAAC
CCCGCTGTGCTCTTGCAN
TGGCGGCCGCCTGTTTCACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTGGACTCAGGAAGAATTCCATACCCCTTAAACCAGCTATACTT
TTAGGGGAAGTGTGAGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTG
TTTTCGCAACCTACTTTTTATTACTTTTTCCCTTCTTACTACCGTCTATT
CCCACTTCACTATTACAATTAAATATCCCCCCATCTCCTTTTCTCACCAA
TTATAACTTCCTTGTAGTTCCAAACCCGCTCACTTTCTTATTCCCGCAAA
ATGCTATTCTTTTTATTTACAGCCCTCGCATACTTTAACGGCGACCAGCC
CCGCCCCCATTTTCCCCCCGCCCCCCTGTCTATATTGATTACACCGGCCC
CAGCTTGGCTTATCCCTATTATTTTTTTTATAATCTAGAAAATTTTGCAT
ACGCGCTGTATTCCGTGTTGCACTTTTACTCTACTATTAGCACACCACCG
CACCCCCGACCCAACATCGCACCCATTAACCTCTTTTTCGCTACCACCCC
CCTTTCTTTTTTTTTCCGATATATTTGCATCCACCCTTTCCCTTCCCATT
CTTCTTTTTTTACCACCCTTTCTTCCCCTTCCTTTTTCCCCCCAATATAA
TTGTTATTCATATTGACCCCTGTTAGTCTCTAGCCGTTATAATGACCCAC
TTTCACATTTACCCCCGTTGTACCTTGTGAATCTTTTTTTCTCTCCCCGT
ATCTTTAATCATTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f12.b1 MSMg01no120_f12.b1 CHROMAT_FILE:
MSMg01no120_f12.b1 PHD_FILE: MSMg01no120_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:45 2005
         (325 letters)



>mm_chr10_40446574_40447298
          Length = 725

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 23  aatttgggaaaggcattgtgttgatgtggagaattaagatgaatggtaattgaaagagaa 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aatttgggaaaggcattgtgttgatgtggagaattaagatgaatggtaattgaaagagaa 282

                                                                       
Query: 83  gataaaagcaagtggtttccatggggaaataatcacgacctgctgtcagattgattccaa 142
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gataaaagcgagtggtttccatggggaaataatcacgacctgctgtcagattgattccaa 342

                                                                       
Query: 143 taagaacactgctttatgtgaaatgttttttaaacagctaaaccaaagcagtatgtgaga 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 taagaacactgctttatgtgaaatgttttttaaacagctaaaccaaagcagtatgtgaga 402

                                                                       
Query: 203 gctcatctgagagcgtgtattgctgtctgtgtgctgttattagacctccgtctgagattc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gctcatctgagagcgtgtattgctgtctgtgtgctgttattagacctccgtctgagattc 462

                                                                       
Query: 263 cttgacgtgcattattcaccagcacagctgtgttttagcttctttgtggtcaactctcag 322
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cttgacgtgcattatccaccagcacagctgtgttttagcttctttgtggtcaactctcag 522

              
Query: 323 ctg 325
           |||
Sbjct: 523 ctg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)