BAC Information

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BAC

Clone NameMSMg01-120J01
Chromosome10 (Build37)
Map Location 47,555,275 - 47,555,814
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387, LOC100041663
Downstream geneLOC100042398, LOC546562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120J01.T7 (MSMg01no120_j01.b1)MSMg01-120J01.TJ (MSMg01no120_j01.g1)
ACCAG330902AG330903
length723720
length of high quality
(start - end)
541 (45 - 585)522 (73 - 594)
definitionCHROMAT_FILE: MSMg01no120_j01.b1 PHD_FILE: MSMg01no120_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:03 2005CHROMAT_FILE: MSMg01no120_j01.g1 PHD_FILE: MSMg01no120_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCGCGGA
ATTCTTTTTATTTACTTTTGAAGTTTTAATTTAATCAAAATATTTTTCCC
TTCCCTGTCTCACTCTCAACCCTCTCATATACCCTTCCCTACTATCCTCG
AAATTCATGCTCACTTTTTACTTTTGTTATTACATGATATATCTATACAT
ATATGTATAATCTATACATCATATATCTATACATATATGTAAAATCATAA
AGAAACATATGCATATGTAAACATATACTTATGTATGCCTGGATAGAACC
TCTTCAATCCACATTATGTTACACTATGTATCTGTGTTTTATATAATATG
TTACATTGTGTATCTGTTTTCAGAAATGAGTATTTGGCACAAATCTGCAT
TTTGATTATGGTTTTCTTTTCATCTCTATTGCAAAGAGAAGATTCCTGAT
TATTGGTAGAGCCTCCACTTATTTGTTGGTAGAAATACAAACATTTAGAA
TGCACTTAGGTATTACATTATTTAATAAAGTTGTGGTTGTAAATTTTTCT
CTGTGGTTCAAGATTCCATTGGCACTGGTTAGTTGCCTGTGAGTCCAGTA
CCGATCATGATTTTCCTCATATTTAGTGCGTTTTGAATTTTCTTTTAAAA
GTAGCTGGGTTTCACCAAATATTTACACCCTGTACCCTTACGATTATAAT
GTATTCTAATAACAAGGTTTATN
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAATAGATAGAAA
TAGAAAATAAATAACCCGATTAAAAAATGGGGCTCAGAACTGAACAAAGA
TTTCTCACCGGAGGAATACTGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATGAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCTATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTAGCGGTTCCTCAGA
AAATTGGACATAGTACTACCAGAAGATCTAGCAATACCTCTTCTGGGCAT
ATATCCAGAAGATGCCCCAACCGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGCA
GTACTACTCAGCTATTAAAAAGAATGAGTTTATAAAATTCCTTACCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCCCAAAG
GAATTCCTCACAAATGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_j01.b1 MSMg01no120_j01.b1 CHROMAT_FILE:
MSMg01no120_j01.b1 PHD_FILE: MSMg01no120_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:03 2005
         (541 letters)



>mm_chr10_47555072_47556014
          Length = 943

 Score =  994 bits (514), Expect = 0.0
 Identities = 533/540 (98%), Gaps = 2/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttttatttacttttgaagttttaatttaatcaaaatatttttcccttccctg 63
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttttatttatttttaaagttttaatttaatcaaaatatttttcccttccctg 263

                                                                       
Query: 64  tctcactctcaaccctctcatatacccttccctactatcctcgaaattcatgctcacttt 123
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctcactctaaaccctctcatatacccttccctactatcctcgaaattcatgctcacttt 323

                                                                       
Query: 124 ttacttttgttattacatgatatatctatacatatatgtataatctatacatcatatatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttacttttgttattacatgatatatctatacatatatgtataatctatacatcatatatc 383

                                                                       
Query: 184 tatacatatatgtaaaatcataaagaaacatatgcatatgtaaacatatacttatgtatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatacatatatgtaaaatcataaagaaacatatgcatatgtaaacatatacttatgtatg 443

                                                                       
Query: 244 cctggatagaacctcttcaatccacattatgttacactatgtatctgtgttttatataat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctggatagaacctcttcaatccacattatgttacactatgtatctgtgttttatataat 503

                                                                       
Query: 304 atgttacattgtgtatctgt--tttcagaaatgagtatttggcacaaatctgcattttga 361
           ||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||
Sbjct: 504 atgttacattgtgtatctgtgttttcaggaatgagtatttggcacaaatctgcattttga 563

                                                                       
Query: 362 ttatggttttcttttcatctctattgcaaagagaagattcctgattattggtagagcctc 421
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatggttttcttgtcatctctattgcaaagagaagattcctgattattggtagagcctc 623

                                                                       
Query: 422 cacttatttgttggtagaaatacaaacatttagaatgcacttaggtattacattatttaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacttatttgttggtagaaatacaaacatttagaatgcacttaggtattacattatttaa 683

                                                                       
Query: 482 taaagttgtggttgtaaatttttctctgtggttcaagattccattggcactggttagttg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaagttgtggttgtaaatttttctctgtggttcaagattccattggcactggttagttg 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 943
Length adjustment: 10
Effective length of query: 531
Effective length of database: 933
Effective search space:   495423
Effective search space used:   495423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)