BAC Information

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BAC

Clone NameMSMg01-120M18
Chromosome10 (Build37)
Map Location 77,145,111 - 77,145,392
singlet/doubletsinglet
Overlap genenone
Upstream geneCol6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243
Downstream geneLOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120M18.T7 (MSMg01no120_m18.b1)MSMg01-120M18.TJ (MSMg01no120_m18.g1)
ACCAG331073AG331074
length762757
length of high quality
(start - end)
280 (139 - 418)45 (136 - 180)
definitionCHROMAT_FILE: MSMg01no120_m18.b1 PHD_FILE: MSMg01no120_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:22 2005CHROMAT_FILE: MSMg01no120_m18.g1 PHD_FILE: MSMg01no120_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATAAAATAACATCTAANAAAAATAAATAGTCTAAATCCTCCCTTGCCCCC
TCTCTCCCANAATCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
AAAAGAGGATCCGCGGAATTCTAAGTTTCCGGACAGCATGTACTACAGAA
TGAGTTGCTATTCTCAAATAGAGTGAGACTCTGTATCAAAAATAAAAACA
AGTATTGGCAGCTCTCACCTATATTCTTCTTCATACAAACTTTAAAAACC
ATTGTCCCTATAGCTGGGTGTAATAGCACACACATGTATTACAACTACTT
GGGAAACTGAGGTAGGATGATGGCTTGAACCCATGAGTTTAAGCGCAGCA
TGGCCAGACTCGGTCACAAAAAAAAAAAAAAAATTTATATCCTATTTAAA
ACTTCCAAACCAACATTAAATAGTAAGCAAAGTATTACAGGAATCGGGCT
GGGAAGATGGCCCAGCAGATAAATATCTTGCTGTGTAAGCATAAGGCTCT
ACATTTAGATCCTTAGTATTGACATGCGTCTGCATGCCTGAGGTCCCAGC
CCTGGGGACATGAAGACAGGAGGATCTTACGAGCATGTGGTCAACTGGTT
TGCCAATATGTGAAGCCCCTTCAGGGATAATGTTATCATTGTTGCAAACA
TAATTTCTCTGTGTTTATGCGCTATCTGTTCACGCGAGCTTGTGCTTGCA
TTATGTGAGTGTGTACCGCTATTAAACACGCCTGTGTATATGTATGTGCA
AAGCCTGTTTGT
AAAAAAAAAGGGAGGAGAGGGGGGGGGGAAGGAACAACCGGGTTCGCTGA
AAACTTGTGTTCCGATGATATGGGAGGCCTGGAGGCCGCCTTTCAAACAA
GAGGAGNGTGAXXXXXXXXXXXXXXXXXXXXXXXXACTAACAGATGCAGA
TGAACCACAGAAAGTCAGATTTATTCAATGGAATACATAAATAGTAAGTA
TACTTCAAAGATGGCAGGAGCTGGTCAACCTAAGAAATCGCAGCAGTAGA
CGACCTTGGGTTGTTTTGTATAAGGCTAGTGTATATTCATAAGGTGGATG
AGGCAGTTTTCTCTGCCAAATCAAGGCAGATAAGATCTTCCTTTCAGGGT
ATTTTCCCCAATGACCCTTCTGTTAAAATATTCCACAAAATGGGGAAAGG
TAGTGAAAAGTACAAATCCAATGCCACTGTAACCAAGCCAGGGTCTCCTG
AGGATTCACTGCCACATGACACGATTAGGACAATCCCACTGGAGCCTGAG
CCTCCAATACAGTAGAAAGAACAGTGCTTAACTATAGTGAGGTAAAGACA
GCTGTGGCTCCCTTGGTGGATGAGTTAGCATCTCTGTTGTTATGATAAAG
TCAACTGACCAAACCAAAAGGGCAAGGAAAGAATTTACTTGGTTTAACTT
ACACTTTCACACCATCCTTGAGGGCTCAAGGCAGGAACTGAGGTGGACCC
CCAAAGGAGTACTGCTTCCATGCTTGCTCCCAATCTATAGGTTAGCTCCT
GGTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_m18.b1 MSMg01no120_m18.b1 CHROMAT_FILE:
MSMg01no120_m18.b1 PHD_FILE: MSMg01no120_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:22 2005
         (280 letters)



>mm_chr10_77144964_77145643
          Length = 680

 Score =  456 bits (236), Expect = e-133
 Identities = 270/282 (95%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtactacagaatgagttgctattctcaaatagagtgagactctgtatcaaaaataaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 429 tgtactacagaatgagttgctattctcaaatagagtgagactctgtctcaaaaataaaaa 370

                                                                       
Query: 61  caagtattggcagctctcacctatattcttcttcatacaaactttaaaaaccattgtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 369 caagtattggcagctctcacctatattcttcttcatacaaactttaaaaactattgtccc 310

                                                                       
Query: 121 tatagctgggtgtaatagcacacacatgtattacaactacttgggaaactgaggtaggat 180
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| 
Sbjct: 309 tatagctgggtgtaatagcacacacatgtagtacaactacttgggaaactgaggcaggag 250

                                                                       
Query: 181 gatggcttgaacccatgagtttaagcgcagcatggccagactcggtcacaaaaaaaaaaa 240
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 249 gatggcttgaacccaggagtttaagcgcagcatggccagacttggtcacaaaaaaaaaaa 190

                                                     
Query: 241 aaaaatttata--tcctatttaaaacttccaaaccaacatta 280
           | ||||  |||  |||||||||||||||||||||||||||||
Sbjct: 189 ataaataaataaatcctatttaaaacttccaaaccaacatta 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)