BAC Information

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BAC

Clone NameMSMg01-120N24
Chromosome10 (Build37)
Map Location 77,349,341 - 77,349,594
singlet/doubletsinglet
Overlap genenone
Upstream genePcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351
Downstream gene1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120N24.T7 (MSMg01no120_n24.b1)MSMg01-120N24.TJ (MSMg01no120_n24.g1)
ACCAG331132AG331133
length706764
length of high quality
(start - end)
273 (49 - 321)120 (136 - 255)
definitionCHROMAT_FILE: MSMg01no120_n24.b1 PHD_FILE: MSMg01no120_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:28 2005CHROMAT_FILE: MSMg01no120_n24.g1 PHD_FILE: MSMg01no120_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCCTGCTTTCCCAGGCTGGGAGCACCGAGATTGGGTGGCAGCCT
TGGGCCTCAGCCTGAAGGACCCCAGGGTCACCTGAAATATGGCCACCAGT
CACCAGGACTGTGGTTCTGGTACAGCCCCCAGTTGGGGGAGAGGGGAAGG
GCCAGCTTAGAGAGTGCAGAGAGGTGCACAGGCTTCTCCACCTGCCCCAG
GACCAGGGAGGGCTGGGTGGGTGGGTCCTGCCTGCTGCACATGCCTAGCT
GGTGGGTATTAGGGGGCAGCGGGATCCAGGGTGACTTCAGCCAGTCCTCA
GCTTCAGGACCCTGGAGAGGGGCTCCTTGGCGCTGGAGTAGATGAGGTAC
GAGCCGGCAGTGGTGTTAAAAGCCTCCCAGTCCCGACAGCCAAAAGTGGG
GAGTTTGTGTACGGCCACGAAGCCCTCATAGCCTTGCCACCTGTGGAAGA
GATAATCAGCCTGGTCCCCTCCTCCACACAAGTGCTCCCAGGGTCAAGTG
GGAAACTGAGGCCCAGGAGAGAAGCTGTCCCCCATTCCAGATCCCAGAGC
AGCAGCCTCATGTCAAGCTGCAAGGGCTCTGATGTTAATATTTTCCAAAA
TTATTTTGTCAAAAGGTGCTAATCCTCAAACCCAATAGGTGAGGGCAGGC
TCCGTC
CAGGGACAAGGGGANGGGGCCGTNAAAAAGNATACATCCCAACCCACCAT
ATTAACTNTCACGATGATGTGGGTGGCCTGGCGGCCGCCTGGTTCANCAC
GGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTGTTTATTGA
AGAAGTTCTTTGTTTCTTCTTGGATTCTGAAGCCTTGCTGGGCTTAGTAA
TCTTCTCTGGCAGTTATTTTTTCTAGGACTTCAGTACACCATTCCCCACG
CACTGGGCTGCAGAGCTCTGCTCAAGAGGCTGCAAATGATCTGGGCTGAT
TGATTGCTATCAAGTGCTACTTGATGCTTCTCCCCTTTGTAGACGATGTG
CGGTGGTGAGGGCTTTGTTGTGTCCAGTTTTTGTTCTTTAGACCTTGGAC
CCTTCCCTGGGTAGCCCTGTCTGTCCTAGGGAATTTTCTAGAATATCAAT
GTATAGATTTTCTATGCTCTTACCTTTTTTCTCTTCTCCCTAAAGGGTGC
CAGTGGTGCTGACTATCAATGATTGACAGTGTTCCAAAGGTCTCCCCTAC
CTTTTCCAATCTTCACCCTTTATTATCGTCTCATGCTGATATTTTAAAAG
ATCTGTCCCGAAGGACTGGCACAAGTGAAAGTTGTTATCATTTTTTACCA
CTGCTGTCAGCTTGTCACCTGACCATGGGACCTTGTGCTCTCTAGAAATG
GTACGCTGTGACCCTTGAACCGTGACGCTATGGCTAAAGTAGGCCACCTC
CTTTCAACAGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_n24.b1 MSMg01no120_n24.b1 CHROMAT_FILE:
MSMg01no120_n24.b1 PHD_FILE: MSMg01no120_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:28 2005
         (273 letters)



>mm_chr10_77349122_77349794
          Length = 673

 Score =  476 bits (246), Expect = e-139
 Identities = 252/254 (99%)
 Strand = Plus / Minus

                                                                       
Query: 20  caggctgggagcaccgagattgggtggcagccttgggcctcagcctgaaggaccccaggg 79
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 473 caggctgggagcaccgagattgggtggcagccctgggcctcagcctgaaggaccccaggg 414

                                                                       
Query: 80  tcacctgaaatatggccaccagtcaccaggactgtggttctggtacagcccccagttggg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcacctgaaatatggccaccagtcaccaggactgtggttctggtacagcccccagttggg 354

                                                                       
Query: 140 ggagaggggaagggccagcttagagagtgcagagaggtgcacaggcttctccacctgccc 199
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 353 ggagaggggaagggccagcttagagtgtgcagagaggtgcacaggcttctccacctgccc 294

                                                                       
Query: 200 caggaccagggagggctgggtgggtgggtcctgcctgctgcacatgcctagctggtgggt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 caggaccagggagggctgggtgggtgggtcctgcctgctgcacatgcctagctggtgggt 234

                         
Query: 260 attagggggcagcg 273
           ||||||||||||||
Sbjct: 233 attagggggcagcg 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)