BAC Information

Click to search

BAC

Clone NameMSMg01-121B01
Chromosome10 (Build37)
Map Location 122,352,079 - 122,352,448
singlet/doubletsinglet
Overlap genePpm1h
Upstream geneSrgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
Downstream geneD630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121B01.T7 (MSMg01no121_b01.b1)MSMg01-121B01.TJ (MSMg01no121_b01.g1)
ACCAG331275AG331276
length661722
length of high quality
(start - end)
---375 (69 - 443)
definitionCHROMAT_FILE: MSMg01no121_b01.b1 PHD_FILE: MSMg01no121_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:43 2005CHROMAT_FILE: MSMg01no121_b01.g1 PHD_FILE: MSMg01no121_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCTCTCTGAGATCAGGCTGGCCTCGAACTCAAGAGCTCTGCCTGTCGAG
AGTAAAGGTGTGTGCCATCATGCCTAGCTAGTTTGAGATTTTTAAGGATA
AACTACAGATAGGAATTCCTCATGAGAGAATCTAGCACATACATATTAAA
TGCGAAAACCGCTACTTTTACATTTTTCCTTATCCACCCCTCCCAAATAA
AAATATTCTGTTTCTACCTGGTAAGTGAGGTGGGGAAGGCTTTGGTCCTG
GAAAAACCCCGATTTAATTAAACAAAGATTGGGCCCTGTCAAACATACGA
CCTGGCACCGGGGACAAAAATTTTTGTTATCGGGCTCTAAGGACACCCCA
CAAGCATCTCTAAATGGGGTGGAAAAACCCGCGAACTCGGCCTTTGTAAT
TGCAAAAAAACATCTTCTTCTTTTTTTTTTTTTTTTTTGGGCCGGCACGG
TGTGCCGCGACATAAACCTCTTTCTCCTAAAAACAAGGAATTTTTCCCCT
CGCGGGAAATACCAAACTGAGTTACTCATTCCCGGCCAACCCCCCCCACT
CCTTAAAAAAAATAAATAGAGCACGCGGCGACCGCGCCACCACAAACAAC
GACGGTGGCCC
ATGTGAGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAGAACTGTCCATGAGGCCAGCTCAGTCAGGG
GGAAGGAAGAGAGATCCATGTTTGCTCTCAGTGCCGCCTGAGGTTTCTAA
CCTAATAAATGTGTATTAACTAGGGAGTTATTTTGACTCTCTTTTATATC
TATTTTTAAATTGGTTCAGAAAACTCAGAAGGAAAAAGAATTAAATTATT
TTCTTCTTCAGACCCTAATAATTCTTTTCCTACAGGCTAGAAAGTAAAAT
TGTGTGTGCGTGTATGTGTGTGTATGTATGTTTGTGTATGTCTGTGTGTA
TGTATGTGTATATGTGTGTGTATGTCTCTGTGTGCATGAATGTGTGTATG
TATGTATATATATGTAAGCATGTATGAGTGTGTGTGCGTGAATGTGTGTA
CATGTTTGTATGTCTCTGTGTGTATGTAAGATAAACAACATAGTTTCAAA
AGCAGGGGCACCTCTGTGTTTACGCCCTATGCTATAACATCCCCTGCTTG
TTTCACAATCATCGGCACAGACAATTTAAAAAGCAAATGCGACAATTGCT
ACACCCGGTTTTTCCTCTTTATTGCACCGCGGCTTCTTTTTTTTTTCTCG
CTTTCCCCCCTTAGTTTTGCTCCACTTCTTTTTCTTCTTTTCCTTATCAC
TTTTCCTCCGCCCCTCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_b01.g1 MSMg01no121_b01.g1 CHROMAT_FILE:
MSMg01no121_b01.g1 PHD_FILE: MSMg01no121_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:43 2005
         (375 letters)



>mm_chr10_122352017_122352791
          Length = 775

 Score =  685 bits (354), Expect = 0.0
 Identities = 367/372 (98%), Gaps = 2/372 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaactgtccatgaggccagctcagtcagggggaaggaagagagatccatgtttgctct 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tagaactgtccatgaggccggctcagtcagggggaaggaagagagatccatgtttgctct 373

                                                                       
Query: 61  cagtgccgcctgaggtttctaacctaataaatgtgtattaactagggagttattttgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cagtgccgcctgaggtttctaacctaataaatgtgtattaactagggagttattttgact 313

                                                                       
Query: 121 ctcttttatatctatttttaaattggttcagaaaactcagaaggaaaaagaattaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctcttttatatctatttttaaattggttcagaaaactcagaaggaaaaagaattaaatta 253

                                                                       
Query: 181 ttttcttcttcagaccctaataattcttttcctacaggctagaaagtaaaattgtgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttttcttcttcagaccctaataattcttttcctacaggctagaaagtaaaattgtgtgtg 193

                                                                       
Query: 241 cgtgtatgtgtgtgtatgtatgtttgtgtatgtctgtgtgtatgtatgtgtatatgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cgtgtatgtgtgtgtatgtatgtttgtgtatgtctgtgtgtatgtatgtgtatatgtgtg 133

                                                                       
Query: 301 tgtatgtctctgtgtgcatgaatgtgtgtatgtatgtatatatatgtaagcatgtatgag 360
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||  
Sbjct: 132 tgtatgtctctgtgtgcatgtatgtgtgtatgtatgtctatatatgtaagcatgtatg-- 75

                       
Query: 361 tgtgtgtgcgtg 372
           ||||||||||||
Sbjct: 74  tgtgtgtgcgtg 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)