BAC Information

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BAC

Clone NameMSMg01-121J14
Chromosome10 (Build37)
Map Location 56,689,171 - 56,689,373
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
Downstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121J14.T7 (MSMg01no121_j14.b1)MSMg01-121J14.TJ (MSMg01no121_j14.g1)
ACCAG331671AG331672
length706728
length of high quality
(start - end)
203 (150 - 352)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no121_j14.b1 PHD_FILE: MSMg01no121_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:25 2005CHROMAT_FILE: MSMg01no121_j14.g1 PHD_FILE: MSMg01no121_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGA
ATTCACTTCTCTTGATTTGTAAGAGAAATTCAATGTCCAAGAAGCCTTGT
GAGCCTGCCTACTCTCTCCTCTAGAATCCCAGAGAAGTGGAGATTTCCAA
AGCCAGTTGGGCAGCAGGGTGACAAGGTACTGATTTAGTAAAAGATAGCA
TCATCTTAAAAACTCTGGAGCCTATGAAGTCCTGTATACTTCCATCAGAA
ACATTACGTTAACACATGGCCTAGTGGATTGAATTATTAGACTTTGCTTC
CCATTTCTTGATTTCTTTCCCATTCTTTTGAATCTCCACTCTCCCCTAAA
TGTTTTTTTTATTGCCCTCCCCGCCTATATAATTTCTTTCTTCCGTGCTC
TTAGCATTCATAGACATGTTTTTCTACCTAAAGTTTTGATTGCCTCTAAG
TGATTCCATTTTCCTGGGGCTTGACTTCTAGTGCACTAGGACACATATGT
AGTGTTTGTATAGGAGTACTCTAGGTATATTCCCTCTTACCTAATCTACA
GAGTTAGAGTATAGACTATTCTTGATAAGCTTTGCAGAATTATAAAGCAT
GGCAAGGCCATTAAATGGATTTCTTGACTTCGTCATTCTGGGAACTTTAC
TAATTTTACGCGCCATGCACATCCCTTATACAGTGCTTCTTATGTTAATG
TCAACG
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATCAGACCTTCAAAGAAGACCTAATTCCAAT
ACTTTTCAAACTATTTTATAGAATAGAGTTTACTTTTCTCTAGTAAATTT
GCTGTTTTTTTTATTCTGAACTCCAGTAATAGTTTATGTAAATCAGCATT
ATTTCTTTTGTCCTCCTTCAGTTGACCTTAATTTGTATTCTTTTAGTTCT
TTGATTTTTAAATTTAGCTGTTTATTTGAAATATTTCTTACTAATGTTTT
TATACTTCTAAATCTGCCCTTTTGTACTGTTTTTGCTGAATACTAACTTT
GATATGATGTCTTTTAACACTTTACCATCTCTGTAGTTTATTCTTTGATC
TAATGGTAGTTCAAACATATATTGATGGACTGCGAGTGCAGTGAAGTTAC
ATCATTTGAGAATATGCATGAAGTTCTAGCTTGATGTCTAGCCTTGCAAA
GGATAAGTGATTATCCGTGTCTATAACTTTATGATATCTCCCAGCCTTTC
TCCAGTTAAACATTTTTAATTTTACACCCCTGTGACAACAGCCGATCTTA
ACGCAATATTTCTTTTTACACTATTTGACACACAATTCATAACTTCACAT
ATACGACCGCCTTTGATCCTGCTTTCCTGAGTTCCTGACAACCCTGCACG
TTCTGTATACTGACTTTATGATGGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_j14.b1 MSMg01no121_j14.b1 CHROMAT_FILE:
MSMg01no121_j14.b1 PHD_FILE: MSMg01no121_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:25 2005
         (203 letters)



>mm_chr10_56688971_56689573
          Length = 603

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagccagttgggcagcagggtgacaaggtactgatttagtaaaagatagcatcatcttaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aagccagttgggcagcagggtgaccaggtactgatttagtaaaagatagcatcatcttaa 260

                                                                       
Query: 61  aaactctggagcctatgaagtcctgtatacttccatcagaaacattacgttaacacatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactctggagcctatgaagtcctgtatacttccatcagaaacattacgttaacacatgg 320

                                                                       
Query: 121 cctagtggattgaattattagactttgcttcccatttcttgatttctttcccattctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagtggattgaattattagactttgcttcccatttcttgatttctttcccattctttt 380

                                  
Query: 181 gaatctccactctcccctaaatg 203
           |||||||||||||||||||||||
Sbjct: 381 gaatctccactctcccctaaatg 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)