Query= MSMg01no122_d04.b1 MSMg01no122_d04.b1 CHROMAT_FILE:
MSMg01no122_d04.b1 PHD_FILE: MSMg01no122_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:24 2005
(680 letters)
>mm_chr10_5042034_5043113
Length = 1080
Score = 1241 bits (642), Expect = 0.0
Identities = 669/678 (98%)
Strand = Plus / Minus
Query: 3 atttctgtgtggaattccacaaagtagactacaattccaagtctgaatttaccatccctc 62
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1062 atttctgtgtggaattccacaaagtagaggacaattccaagtctgaatttaccatccctc 1003
Query: 63 ttcccagaaccagcctgtacatgaaataacttgactttcaatatggtggtttgttgacag 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1002 ttcccagaaccagcctgtacatgaaataacttgactttcaatatggtggtttattgacag 943
Query: 123 tattttatcattcaatgggccacataattctcatgtatcttaatagagaatttggggtgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tattttatcattcaatgggccacataattctcatgtatcttaatagagaatttggggtgg 883
Query: 183 ttgtttaatagagtataggctggcctcaaacctaagattctcttattgcaatatcctgag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ttgtttaatagagtataggctggcctcaaacctaagattctcttattgcaatatcctgag 823
Query: 243 tgccagcatcacaggcttgcaccaccacagtgggcctcgttgatttttttaaaataaaca 302
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 822 tgccagcatcacaggcttgcaccaccacagtgggcctcgttgattttttaaaaataaaca 763
Query: 303 ttggttttataatgcactgtgctgcattcagataattggctatgaaaacttggctagaac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttggttttataatgcactgtgctgcattcagataattggctatgaaaacttggctagaac 703
Query: 363 ctcatttggatctgtttttcatctttaaaatcttcctaggtgcatcttcctaggtgcatc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctcatttggatctgtttttcatctttaaaatcttcctaggtgcatcttcctaggtgcatc 643
Query: 423 ttcatctcctttagtcaataaaacccaaggaatctgtgattgccatcgctgtttctaaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttcatctcctttagtcaataaaacccaaggaatctgtgattgccatcgctgtttctaaac 583
Query: 483 ttagaccccagttaccaaagaagacacaccatacatttcccattaaaactcaggaaacaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 582 ttagaccccagttaccaaagaagacacaccatacatttcccattaaaactcagaaaacaa 523
Query: 543 acaactctcagaagtctctcaatagtggtagaaaatacttatggttctgctgatataaaa 602
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 522 acaactctcagaagtctctcaatagtggtagaaaatacttgtggttctgctgctataaaa 463
Query: 603 attaaaattaagttttaatttgaatgactttaaagaacggccagtgggttaaaaactaga 662
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 462 attaaaattaagttttaatttgaatgactttaaagaatggccagtgggttaaaaactaga 403
Query: 663 ggaagagggaggtagaaa 680
||||||||||||| ||||
Sbjct: 402 ggaagagggaggtggaaa 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_d04.g1 MSMg01no122_d04.g1 CHROMAT_FILE:
MSMg01no122_d04.g1 PHD_FILE: MSMg01no122_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:24 2005
(651 letters)
>mm_chr10_4905347_4906395
Length = 1049
Score = 1172 bits (606), Expect = 0.0
Identities = 640/652 (98%), Gaps = 3/652 (0%)
Strand = Plus / Plus
Query: 1 atttttatgtagtgaatacaggagtctgggaattggtgcttgtttctgaagctttagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atttttatgtagtgaatacaggagtctgggaattggtgcttgtttctgaagctttagaaa 259
Query: 61 gaacatttctgagacatatgtggtggagagagcagtgtcacagaagcatgccagtaaagt 120
| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 260 gtacatttctgagacataaatggtggagagagcagtgtctcagaagcatgccagtaaagt 319
Query: 121 ccccgtaggacctagttctagttgccctcagcagaaagttccagtagcacacctttggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccccgtaggacctagttctagttgccctcagcagaaagttccagtagcacacctttggtt 379
Query: 181 agctttcttcc-cctttgcaatcttactcccaatacattcttcctctttagctacctggg 239
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agttttcttcctcctttgcaatcttactcccaatacattcttcctctttagctacctggg 439
Query: 240 aatgcctcctcaaacagccacatacacccaaatgctgtcctgtgtgatgagcccaacaga 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 440 aatgcctcctcaaacagccacatacacccaaatgctgtcctgtgggatgagcccaacaga 499
Query: 300 tcacatgtgaacagccgtgtagccatataaatcagctaaataaaccagacaagtgctagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcacatgtgaacagccgtgtagccatataaatcagctaaataaaccagacaagtgctagc 559
Query: 360 ataagagaatatcacattgaaagtgtactcccctgacgtctggatccaaatcctcctaca 419
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 560 ataagagaatatcacattgaaagtgtactcccctgatgtctggatccaaatcttcctaca 619
Query: 420 tttacctgcagattgaaggagccttcacatgcgtgttgcaagagtacacctgactttcta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttacctgcagattgaaggagccttcacatgcgtgttgcaagagtacacctgactttcta 679
Query: 480 aatgaaaggcatctctgccactgtatttgacctattgtctatgagatttttttcatggtc 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 680 aatgaaaggcatctctgccactgtatttgacctattgtctatgagatgtttttcatggtc 739
Query: 540 agttaaattctgggttaaattattctgaaaaaaaaaaagtagtcgacttttgttaaaaca 599
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 740 agttaaattctgggttaaattattctgaaaaaaaaa--gtagtcgacttttgttaaaaca 797
Query: 600 ttcctctgtgtaagtgccctactcattcatgtatagttagaattacaggatc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttcctctgtgtaagtgccctactcattcatgtatagttagaattacaggatc 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1049
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1039
Effective search space: 665999
Effective search space used: 665999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
