Query= MSMg01no122_i08.b1 MSMg01no122_i08.b1 CHROMAT_FILE:
MSMg01no122_i08.b1 PHD_FILE: MSMg01no122_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:03 2005
(594 letters)
>mm_chr10_72360190_72361183
Length = 994
Score = 891 bits (461), Expect = 0.0
Identities = 558/603 (92%), Gaps = 28/603 (4%)
Strand = Plus / Minus
Query: 1 agcaaaatgagcaccattgttgacatactttagcctagtacagtggttttatttaccatg 60
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||
Sbjct: 782 agcaaaatgagcaccgttgttgacatactttagcaaagtacagtgtttttatttactatg 723
Query: 61 acccctggatttaagggtggtctgacggttatacttcctaaagaaaaaccaactgtaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 acccctggatttaagggtggtctgacggttatacttcctaaagaaaaaccaactgtaatt 663
Query: 121 gttttgatgtatgaccagcagatttcaggtactgttgtattgtttccaccacagcaaggt 180
|| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 662 gtgttgatgtatgaccagcagatttcaggtactgttgtattgttt--------------t 617
Query: 181 gttttgttt-tgtttgttt-tt---gtttt---tttggtt-ttttaaaattctattaatg 231
| ||||||| | ||||||| || ||||| |||| || |||| || |||||||||
Sbjct: 616 g-tttgtttgtttttgtttcttggggttttttgtttgtttgtttt---atcctattaatg 561
Query: 232 tctggggtgcatgaaaaacactgaaaggtcagaggtgatcaagcagggaacatttaatgc 291
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct: 560 tctggggtgcatgaaaaacactgaaatgccagaggtgatcaaacagggaacatttaatgc 501
Query: 292 aaggcccttgacatttatctttctttttaaaatctattgatttatttgttggggagaagg 351
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 500 aaggcccttgacatttatctttcttttaaaaatctattgatttatttgatggggagaagg 441
Query: 352 gcacatgttctatgggactgttgaggtttggtcttttactatttattggaatactaagtg 411
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcacatgttctacgggactgttgaggtttggtcttttactatttattggaatactaagtg 381
Query: 412 ctggccttcaagatttagagtctgcacgtggcctgagggatccttccacaccccacccca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctggccttcaagatttagagtctgcacgtggcctgagggatccttccacaccccacccca 321
Query: 472 ctccccagttaattctgattgataaataaagatgctagcagccaataggtgggaagaaga 531
| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 c-ccccggttaattctgattgatagataaagatgctagcagccaataggtgggaagaaga 262
Query: 532 gacatgtggtagggttgaggttttgggaccactaggaaggaacgagaggaaacagaacat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatgtggtagggttgaggttttgggaccactaggaaggaacgagaggaaacagaacat 202
Query: 592 cag 594
|||
Sbjct: 201 cag 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_i08.g1 MSMg01no122_i08.g1 CHROMAT_FILE:
MSMg01no122_i08.g1 PHD_FILE: MSMg01no122_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:04 2005
(746 letters)
>mm_chr10_72268321_72269467
Length = 1147
Score = 1386 bits (717), Expect = 0.0
Identities = 741/749 (98%), Gaps = 3/749 (0%)
Strand = Plus / Plus
Query: 1 ctggatgcttctgaaatcttctttattttgtcctcctgatttggcacttgttttattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggatgcttctgaaatcttctttattttgtcctcctgatttggcacttgttttattttt 260
Query: 61 gagtagacactttgtatgtcataagtgtcattcaccacggcacacacgaggttgctgctc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gagtagacactttgtatgtcataagtgtcattcaccacagcacacacgaggttgctgctc 320
Query: 121 tcgtcctatgtcaattgttttcacgagttcccttcttctttgtctacctttgatcccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgtcctatgtcaattgttttcacgagttcccttcttctttgtctacctttgatcccttt 380
Query: 181 taaatcatggcttctcttcaggggcatttccatcctgtgttattgctacagcatcttgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatcatggcttctcttcaggggcatttccatcctgtgttattgctacagcatcttgga 440
Query: 241 cctcatctgccctgaacttacacatttcatcaattttcagaactattttagctgctgctc 300
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcgtctgccctgaatttacacatttcatcaattttcagaactattttagctgctgctc 500
Query: 301 ctcaagtgtattttaatttttccatattctcttctctcttgtgagcttcctcaataaaca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ctcaagtgtattttaatttttccatattctcttctctcttgtgagcttcctcaatacaca 560
Query: 361 tgctcactaccagtctctatctctgagctccatgaagctgtttggattt-aatgttcttt 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tgctcactaccagtctctatctctgagctccatgaagctgtttggattttaatgttcttt 620
Query: 420 ctgttttgctttagggattgggaattcatctcagtattagagtgcttgcttggcatgcat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgttttgctttagggattgggaattcatctcagtattagagtgcttgcttggcatgcat 680
Query: 480 gaggccctgacttaaacttgagctatactcccagcaccaaaactaaaagtaacaaaattt 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaccctgacttaaacttgagctatactcccagcaccaaaactaaaagtaacaaaattt 740
Query: 540 aaagactgctcctt-a-atatatatatatatatatttccctttttatgtgtacagatgag 597
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagactgctcctttatatatatatatatatatatttccctttttatgtgtacagatgag 800
Query: 598 tgtctgtaggcatgtaggtatgctctatggatgcctagtgtctgcagaggacagaaaagg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtctgtaggcatgtaggtatgctctatggatgcctagtgtctgcagaggacagaaaagg 860
Query: 658 gggccaggttttccatgagctgaacccaagtctctttgcttgcacagccaatattgtaaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gggccaggttttccatgagctgaacccaagtctctttgcttgcacagccaatattgtaaa 920
Query: 718 tacaatacaattgacccaaataagctgtt 746
|||||||||||||||||||||||||||||
Sbjct: 921 tacaatacaattgacccaaataagctgtt 949
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1147
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1137
Effective search space: 836832
Effective search space used: 836832
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
