BAC Information

Click to search

BAC

Clone NameMSMg01-122K11
Chromosome10 (Build37)
Map Location 91,611,773 - 91,721,806
singlet/doubletdoublet
Overlap geneLOC667203
Upstream geneTmpo, LOC100041769, LOC100041799
Downstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122K11.T7 (MSMg01no122_k11.b1)MSMg01-122K11.TJ (MSMg01no122_k11.g1)
ACCAG332457AG332458
length9761,038
length of high quality
(start - end)		727 (87 - 813)781 (86 - 866)
definitionCHROMAT_FILE: MSMg01no122_k11.b1 PHD_FILE: MSMg01no122_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:21 2005CHROMAT_FILE: MSMg01no122_k11.g1 PHD_FILE: MSMg01no122_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,611,773 - 91,612,499)(91,721,026 - 91,721,806)
sequence
CCTTTCATANNNNNAACATTCGGCGCTATXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTCTATGTCATGTCATTTACTTGAGTGACAAATGTCA
ATTTTAAGAGTCTTATCCTTCATGGCAGAGGATGACAACATGGGGCAACA
ACATGTGTGGTCTGAAGGCCAACAGAGGATAGACTTGGAGAAAGAGAGGT
AGTCAAGTCCATGACAGAGACAGATAAGGAAGGCACCCTGTGGATGACCA
AGTACCAGGAAAGCCTGGGAAGTGGGAACATTCAGGAGAGAATGGATCAT
CAGGACCAAGCACATAGGAATAGTTGTGAGGGAACCAAAGAGTCCAGTTG
GAATCTGCAACCCAGAAACTATTCATTCAGTTCAGTGGTGTCTTAAGATT
AGGCAGGCGCCAGATGCTAAAACAGGTAAGAGAGAGACAATGACAAACTT
CAAGTCCATGGACATGCTATGTTAAGATGGAGAGACCAGAATGTATGGGG
AGGGACCATCACAGTGGGAGGAAACGAAGGGCACGAGAAATGCTGTACTT
GAGCCATGATCATCTGTGCTGAAGCCCGGCCTAGATCTCAGCTCCCTCCG
AGGAACCTTAGCTTCCCTGGGGATCTTTCTTCCCTTTCTCTCTTCCCTCT
GTTCTATGTGTTCCCCATGGCATTCACACGGAGATGACTTCCAAGTAGGT
TGCCCTTGTCTTGTTTGTCATACTCAACCTCTTCAGCAAGACAAATCTTG
AAAAAACTCAGATTCAGAACTGCTAATTACTATTTCTCCTTACAAAATGA
GACAAAAGGGCATCTGTCTCTTACATCATTATTACTTTTTTGGATACATT
TTCCTTTTTTTTTTTTTTGGTTTCCTTTCCAACCTTAACCCGCCAATTCC
ACCCCAATTTCTTCTGGAACAATTTTTATACCTTTTTTACAAAATACCCC
TTCTTTTTTTAACCAATAAATGGGGG

CCTATTTTNTNNNNACCATGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCACTTCTGTGTCTCCAACCTCAAAC
TCAGACATCTCAGGTAACTCTCTTTCATCTGCCATCTCTGTGTTTTTCCA
TAGTCTGCTTGCTTGAAGCTGCGGAAGTTTCTTCCCATTGAACCTGCTGA
GTTTGTTTAACACTTCGGATGAAGGAACTGGTGAAGAACTTGAGGAGTGT
GTTTCTCCATGCATTCAAAGACTAGCCAGGTTTCATTTTACTTTCTGCCT
TTTCTTTCCGGTGCTGTAAGCGTGGTTGTACTTTCTTTGAAGTGACCCAT
GGGAAGAATGCTGCTTGCTTCATTTTGGAGAGTGCCTTTTGCTAGCTCCA
GATCTGTTGTGTGGGAAATCCTTTTGACTACACTTGATTTTCTGAAAGAA
AAAAAAAAAAAGTAAGAGGCCCCTTTATGTAGCAACTAGACTCTATAATG
GGAAGTGGAGGAACTGTTTCTTCTAAAGTCATCTTTTACTTCCCTGCACT
CATGCTGGCTTGCAGAACACTACTTGTTTTCCTTAAGCCAAATTCATCAC
TGATGGCTTTATTCACCATAAGGCCCGCTAGAACACAACTCAACTCTTCT
GTAGGCTGGTCTTGTATGGCAACCAAGGATAACAGGGATGTAGCATAGAA
GGTTTGGCTGTAAGATCAGAAAGAAAGAAATCCAAAGCATTACTCTAAGA
TTTATGGTGTAGCACCTGGAATAATATGTATTAGGCCGTGGGACGGTATT
TAGGATTGGCTATCAGGAATCTGAAATTGGATATATTGGGTCTAGCATCC
TAGCTCTCACCCAGCTAGTTAAAGTAATCACTTTAACTCGGTGAGACATT
TGAGAGGTATGACTAAGTTGGAAAAGTACCCCTGGAAATCCAGGGCCAAG
TGCTGGTTAATGGGGTATAATTTGGGTTTCCCCCCCAAGTGGGAATTACT
TATTTGAAAACACTGGACGTTTTAAAAATCCCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_k11.b1 MSMg01no122_k11.b1 CHROMAT_FILE:
MSMg01no122_k11.b1 PHD_FILE: MSMg01no122_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:21 2005
         (727 letters)



>mm_chr10_91611573_91612699
          Length = 1127

 Score = 1382 bits (715), Expect = 0.0
 Identities = 724/727 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgacaaatgtcaattttaagagtcttatccttcatggcagaggatgacaacatggggc 60
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 201 agtgacaaatgtcaattttaagagtcttataaatcatggcagaggatgacaacatggggc 260

                                                                       
Query: 61  aacaacatgtgtggtctgaaggccaacagaggatagacttggagaaagagaggtagtcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaacatgtgtggtctgaaggccaacagaggatagacttggagaaagagaggtagtcaa 320

                                                                       
Query: 121 gtccatgacagagacagataaggaaggcaccctgtggatgaccaagtaccaggaaagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccatgacagagacagataaggaaggcaccctgtggatgaccaagtaccaggaaagcct 380

                                                                       
Query: 181 gggaagtgggaacattcaggagagaatggatcatcaggaccaagcacataggaatagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagtgggaacattcaggagagaatggatcatcaggaccaagcacataggaatagttg 440

                                                                       
Query: 241 tgagggaaccaaagagtccagttggaatctgcaacccagaaactattcattcagttcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagggaaccaaagagtccagttggaatctgcaacccagaaactattcattcagttcagt 500

                                                                       
Query: 301 ggtgtcttaagattaggcaggcgccagatgctaaaacaggtaagagagagacaatgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgtcttaagattaggcaggcgccagatgctaaaacaggtaagagagagacaatgacaa 560

                                                                       
Query: 361 acttcaagtccatggacatgctatgttaagatggagagaccagaatgtatggggagggac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttcaagtccatggacatgctatgttaagatggagagaccagaatgtatggggagggac 620

                                                                       
Query: 421 catcacagtgggaggaaacgaagggcacgagaaatgctgtacttgagccatgatcatctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcacagtgggaggaaacgaagggcacgagaaatgctgtacttgagccatgatcatctg 680

                                                                       
Query: 481 tgctgaagcccggcctagatctcagctccctccgaggaaccttagcttccctggggatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgaagcccggcctagatctcagctccctccgaggaaccttagcttccctggggatct 740

                                                                       
Query: 541 ttcttccctttctctcttccctctgttctatgtgttccccatggcattcacacggagatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcttccctttctctcttccctctgttctatgtgttccccatggcattcacacggagatg 800

                                                                       
Query: 601 acttccaagtaggttgcccttgtcttgtttgtcatactcaacctcttcagcaagacaaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acttccaagtaggttgcccttgtcttgtttgtcatactcaacctcttcagcaagacaaat 860

                                                                       
Query: 661 cttgaaaaaactcagattcagaactgctaattactatttctccttacaaaatgagacaaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cttgaaaaaactcagattcagaactgctaattactatttctccttacaaaatgagacaaa 920

                  
Query: 721 agggcat 727
           |||||||
Sbjct: 921 agggcat 927


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1127
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1117
Effective search space:   800889
Effective search space used:   800889
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no122_k11.g1 MSMg01no122_k11.g1 CHROMAT_FILE:
MSMg01no122_k11.g1 PHD_FILE: MSMg01no122_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:21 2005
         (781 letters)



>mm_chr10_91720995_91722175
          Length = 1181

 Score = 1495 bits (773), Expect = 0.0
 Identities = 779/781 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccaacctcaaactcagacatctcaggtaactctctttcatctgccatctctgtgttt 60
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 812 tctccaacctcaaactcagacatctcaggtaagtcgctttcatctgccatctctgtgttt 753

                                                                       
Query: 61  ttccatagtctgcttgcttgaagctgcggaagtttcttcccattgaacctgctgagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttccatagtctgcttgcttgaagctgcggaagtttcttcccattgaacctgctgagtttg 693

                                                                       
Query: 121 tttaacacttcggatgaaggaactggtgaagaacttgaggagtgtgtttctccatgcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tttaacacttcggatgaaggaactggtgaagaacttgaggagtgtgtttctccatgcatt 633

                                                                       
Query: 181 caaagactagccaggtttcattttactttctgccttttctttccggtgctgtaagcgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 caaagactagccaggtttcattttactttctgccttttctttccggtgctgtaagcgtgg 573

                                                                       
Query: 241 ttgtactttctttgaagtgacccatgggaagaatgctgcttgcttcattttggagagtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttgtactttctttgaagtgacccatgggaagaatgctgcttgcttcattttggagagtgc 513

                                                                       
Query: 301 cttttgctagctccagatctgttgtgtgggaaatccttttgactacacttgattttctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cttttgctagctccagatctgttgtgtgggaaatccttttgactacacttgattttctga 453

                                                                       
Query: 361 aagaaaaaaaaaaaaagtaagaggcccctttatgtagcaactagactctataatgggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagaaaaaaaaaaaaagtaagaggcccctttatgtagcaactagactctataatgggaag 393

                                                                       
Query: 421 tggaggaactgtttcttctaaagtcatcttttacttccctgcactcatgctggcttgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tggaggaactgtttcttctaaagtcatcttttacttccctgcactcatgctggcttgcag 333

                                                                       
Query: 481 aacactacttgttttccttaagccaaattcatcactgatggctttattcaccataaggcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aacactacttgttttccttaagccaaattcatcactgatggctttattcaccataaggcc 273

                                                                       
Query: 541 cgctagaacacaactcaactcttctgtaggctggtcttgtatggcaaccaaggataacag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cgctagaacacaactcaactcttctgtaggctggtcttgtatggcaaccaaggataacag 213

                                                                       
Query: 601 ggatgtagcatagaaggtttggctgtaagatcagaaagaaagaaatccaaagcattactc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ggatgtagcatagaaggtttggctgtaagatcagaaagaaagaaatccaaagcattactc 153

                                                                       
Query: 661 taagatttatggtgtagcacctggaataatatgtattaggccgtgggacggtatttagga 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 taagatttatggtgtagcacctggaataatatgtattaggccgtgggacggtatttagga 93

                                                                       
Query: 721 ttggctatcaggaatctgaaattggatatattgggtctagcatcctagctctcacccagc 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ttggctatcaggaatctgaaattggatatattgggtctagcatcctagctctcacccagc 33

            
Query: 781 t 781
           |
Sbjct: 32  t 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 781
Length of database: 1181
Length adjustment: 10
Effective length of query: 771
Effective length of database: 1171
Effective search space:   902841
Effective search space used:   902841
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |