BAC Information

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BAC

Clone NameMSMg01-123J22
Chromosome10 (Build37)
Map Location 100,174,601 - 100,174,958
singlet/doubletsinglet
Overlap genenone
Upstream geneCsl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123J22.T7 (MSMg01no123_j22.b1)MSMg01-123J22.TJ (MSMg01no123_j22.g1)
ACCAG333179AG333180
length1,2381,203
length of high quality
(start - end)
332 (137 - 468)359 (129 - 487)
definitionCHROMAT_FILE: MSMg01no123_j22.b1 PHD_FILE: MSMg01no123_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:35 2005CHROMAT_FILE: MSMg01no123_j22.g1 PHD_FILE: MSMg01no123_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAAATTTNTNNNGATCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGAATACCCCCTTTATGACCCCCACATGA
AAAAATGTTCAACATCCTGAACCTTTAAGAACACGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCCGG
TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
CTTGGTGGGATTGCAAGCTTATACAACCACTCTGGAAATCAGTCTGGCAG
TTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCCGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCACCAACTGTTAAGAAGGACACATGCT
CCACTATGTTCATAGTTTCCTTATTTATAATATCCAGAAGCTGGATAAAA
CCCAGATGCCCCTCAACATAGTAATGCATACAGAAAATATGGTACATTTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGGCAAATGGATGGATTTGGAGGGCATCATCCAGAGTGAGGTAACCCAA
TAACAAAAGAACTCGCACCATATGTACTCACTGATAAGTGGATATTAGCC
CAGAAACTTAGGATACCCAAGATATAAGATACCATTTGCTAAACACATGA
AACTCATGGAGAAGGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAAA
ATTGAGAACAAAACACCCTTAGAAGGACTTTACAAAGACCAAGTTTGGGT
CTGATACTAAAGGATGGACCATCTAGAGACTGCCCTATCCGGGGATCCAT
CCCCATAATCCCCTTTCCAAATGCCTGACCCAATTGCATACCCTAGCAAG
ATTTTTGCTGAAAGCACCCCGGACTACCTGTCTCTTGGTGAAACTATGCC
TCGGTCCTGCTCAACCCATAAATTGGCATGCCTCTCCTTCCCTCTATTGG
ATAGTATTCCACAGTCCCCCCTCTGGCAAACATCTTTTTCTATATTCCCC
CTGTACTCTACAGGGTTTCCCCAATCTCTATTACTGGGGAATCCCTCTCT
TTGCAAACTTACCCCTTAACTTCCCCTCTAAATGCTCCGCGCTCCCTCCT
CCTTCCCCTTAGACTTCCAAAATATACGTTNCTCTTTTCCTCCCATTCTA
TCTCGCAAATCAGACTCCCCTCCCTGTCTCTCTTGCCG
NNAAATATATTNNNTATGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAACGCCCCTCTGNCTGNNC
CTGGCTTTTGGTCATGCCTTTAAAGCCCCCTTTCAATGGAAGCTCTTAGT
TCCTTCTCTGTCTCAATAGGATTCTTCTGAATATTGATATTTCTCCTTAT
GAAAATGCACCAGCTTTATTAAATGGATATTATAGTGATTTACAGATCCT
ATTTCTCTTTGAAATATTTAGTGACGTTAAATTATTGAGATTCTAAAAAG
GTAAAAAAAAAAAACCAACAAACCAAAACCAAAACAAAAAACAAAACCAC
AACCTCCACCTCATTAATTCATTTGCTTAGTACCTGTTTGGTTCTCTAAG
CATATATTTTTTTTAAAATATTTAACTTATTGCTTATTTATAAAGGATAT
TTCTAGTTTTTTTTTTTTTTCCAAGGAAGGTCCAGTGTCTCACAATTCAA
AAAGAATTTTCTTTTATATATTTGAAATATTGTGTTACCAAAATTTAACA
TTCTTCCCTCCCACTGCAAATTTTACCTTATTTCATTGTCTTGCGGACTT
CTAATAAATATGATCATGAAACATCAGACTGTATGGTTTTGACTTTTCCT
GACATAATGCCCTATACTAGCTATCTCGTTACTTTAATTTGCAATTCCAT
TTTAACAAGCATCAGAGTTTTTTCCAAATTTTGCTGCTTATAATTCCGAT
TGGTCAAAAAGTAATCTATTGACAGTAGTTTCCATTCCTCCTGATTTTTT
CACCCCCTTGATTTCCTTCTGCTTGCTTTAAAAATGCCCGCTGTTAATAA
CATGTATTTCATTTTGTGGTTTCAAAGGTATTTTGTGCCCTATTATTTAA
AAGTCTTCTCCTTAAAGGGTTCTTCCTTACTTTCCATTATCTTTTATTTT
ATTATTTCGATGACATGGTATTTGCCATATAATATCCTTTTTTTCCTTAC
CTCTATATGTCCTCTGTACGTCACATTGCACTTCTCTAATTTTTACATAC
ACAATTTCTCTTCTTCTTATAATTTCCAATTCTCTTTTTAATTATCTGGT
TCTCTTGTTTCAACCCCCTTCCTATAATATTCCTCTAATTCTGTTCTCCT
TTCTACTTTACCTTTATCTCGTCTTTCTTTCTTTTTTCTATCTATACCCC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_j22.g1 MSMg01no123_j22.g1 CHROMAT_FILE:
MSMg01no123_j22.g1 PHD_FILE: MSMg01no123_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:35 2005
         (359 letters)



>mm_chr10_100174401_100175158
          Length = 758

 Score =  609 bits (315), Expect = e-179
 Identities = 348/363 (95%), Gaps = 9/363 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttcaatggaagctcttagttccttctctgtctcaataggattcttctgaatattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttcaatggaagctcttagttccttctctgtctcaataggattcttctgaatattgat 260

                                                                       
Query: 61  atttctccttatgaaaatgcaccagctttattaaatggatattatagtgatttacagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttctccttatgaaaatgcaccagctttattaaatggatattatagtgatttacagatc 320

                                                                       
Query: 121 ctatttctctttgaaatatttagtgacgttaaattattgagattctaaaaaggtaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatttctctttgaaatatttagtgacgttaaattattgagattctaaaaaggtaaaaaa 380

                                                                       
Query: 181 aaaaaaccaacaaaccaaaaccaaaacaaaaaacaaaaccacaacctccacctcattaat 240
           ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaa-ccaaaaaaccaaaaccaaaacaaaaaacaaaaccacaacctccacctcattaat 439

                                                                       
Query: 241 tcatttgcttagtacctgtttggttctctaagcatatatttttttta----aaatattta 296
           ||||||||||||||||||||||||||||||||||||||||||    |    |||||||||
Sbjct: 440 tcatttgcttagtacctgtttggttctctaagcatatatttt----acagaaaatattta 495

                                                                       
Query: 297 acttattgcttatttataaaggatatttctagttttttttttttttccaaggaaggtcca 356
           |||||||||||||||||||||||||||||||||||| ||| |   |||||||||||||||
Sbjct: 496 acttattgcttatttataaaggatatttctagttttctttatcaatccaaggaaggtcca 555

              
Query: 357 gtg 359
           |||
Sbjct: 556 gtg 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 758
Length adjustment: 9
Effective length of query: 350
Effective length of database: 749
Effective search space:   262150
Effective search space used:   262150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)