BAC Information

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BAC

Clone NameMSMg01-123K06
Chromosome10 (Build37)
Map Location 52,806,243 - 52,806,803
singlet/doubletsinglet
Overlap geneSlc35f1
Upstream geneRos1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123K06.T7 (MSMg01no123_k06.b1)MSMg01-123K06.TJ (MSMg01no123_k06.g1)
ACCAG333193AG333194
length1,4391,178
length of high quality
(start - end)
190 (120 - 309)561 (126 - 686)
definitionCHROMAT_FILE: MSMg01no123_k06.b1 PHD_FILE: MSMg01no123_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:38 2005CHROMAT_FILE: MSMg01no123_k06.g1 PHD_FILE: MSMg01no123_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCTATGCGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
CTCCCCAGAGATGTTACCTTTAATTATGTGTGGACATTTGTGGGTGCATG
TGTTCCACATTTTACATGTGGCCAGAGAATATAGGAGAGTCAGTTTTCTT
CTTTTGAGGTGTGGTTATCTGGGGGATCAGACTCAGGCAGTCAAGTTTGA
TAAGCCTTCTTGACAGCCTTATTGCTTTCTTAACCATAACCTAAGTAAGT
TTAAGGGGTCTTTGGGGTCCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGCACCTTCCTCCTTCCCTTTTTCTTTTTCTTTTTTATCTCC
TTTCTTCTCTCTTTATCTCTCTTCCTTCCTTTTTTCCCTCTCTCTTTTTT
TTTTTCTCCTTTTCCACTCCCCCTTCCTTTTTCTTTTTCTTCCTATCCTT
CCTTTTTTTTTTTCCCCTCTCCTTTCTTTACTTCTTCTTCCTTCCCCCCA
TATACTTGCACTTTCTCCTTTTTTCTTCTTTTCCTTCTTTTTCCCTCTCC
TTCCTTTCCTCTTCTCTCTTTCTTCCTATCATATCCTTTCTCCTCTTTTT
TTATCCTTTCTTCCTTCTTTCTCCTTTTTTCCTTCGTCCCCTCATTCTCC
TCCTTTTTTCTTCTTTTTATCCTTCCTTTCTTTCCCTTCTCCTTTTCTTC
TTTCTTCTTCTTTCTCTTTTTTTCTTTTCTTCTTTTTCTCTTATCTTTCT
TTCTCTTCTTCTTCCATTCCTTCTTTTATACTCCTCCCCTTTTATTTTTT
TTTTACCTCTTTTTTCTTTTTCTCTCTTTTCTCTTTTTTTCTTCTTCTTG
CTTTATCCTTCTCTTTTTTTTCCTCTCTCCTTTTTTTCTCTTCTTTTCTC
CTCTTTTCTTTTGTCTTTCTACGATCTCTTCTCCTCTTCTTTTTTCTTCT
CTTTTCTCTTCTCTTCTCCTCTATCGCTTTACCTCTTCTTTTCCTTCTGT
TCCCTCTTTTATCTCTTCTACTTCTCTCTCTTTTCGTCTTCTTTTTCTTT
TTCTTTCTTTCCCTTTTCTCCTATTCCCTCTTTTTTTTCTCTCTTTCTCT
CCTCTCTTTACCTTTTCTTTTCTCTCCTTTTTCCTCTTTCCCTTTCTCTC
TCCCTCTCTCCCTTTTTTTCTTTCCTATCTTTCCCTCTCTCTCTTTTTCT
TCCTTTCTTCCTCATTTCGCCTCTCCTTCTCTTTCTTCTCTTCGTTCTCT
TCTTTCCTCTTTTCCCTTCCTTAGTCCTCTATTCTCCATCCCCCCTCTAT
ATCTCTCTCCTCTCTCCTCCTTATCATTCTTCCCTTCTTCTTTTCTTTCT
TTTATTTATCTCTCTTTCTTTCTCTCTTTTCTCTCTCCTCTTCTCTTTCT
TTTCCTTCCCTCCTCCTTTTTCTCTTTACTCTTTTTGTA
GCTTTTTTTNTNNCCACATGGNAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAATTGGGAATCTAGCAT
GCCCATGCTTTTGGCCAGCCTTCTGGCAAAATGAGGAATAGACAAAAAGC
TTAGAGCTCTTCATGGTGAGGGAATAAAAGATTTCTTAAAAGAGAATGGC
CAGGGCTTGATTTAGGAAGGATGCTCATATAAGGCTGCCTTGCCAACGTG
GCATTTACTCTGAATGTGAAGGACTAGCAGGAGATTAGAGAAGGTGTGAA
AAGAATATTTTAGGTAGTGGTGTCGTCACCTGAAAAGATTCTCAAGTAGG
GTAAAGTTATGTTCATTCTGGGGGTTTTCAGAAGCCAGGGTAACTGAATC
ACAGGGTTGAGGTAGAGAAATCAGGGAGGCCGGCAGAGCACACAGAGCCC
TATATATCTTAGAAAGAAATTTGTAATTGCAGTAGGATGTAGGACCATGA
AAGTCAGCCTGGTTCCTGGTTGAGCTAAGGTTAGAAACCCCGGTGATACA
CTAGCAAGATTTTGCTGAAAGGACCCAGGTATAGCTGTCTCTTGTGAGAC
TATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTG
GATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAATAACCAAGGAG
CTAAAGGGATCTACAACCCTATAGGTGGAACAACAATATGAACTACTCAG
TACCCCCCCAGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCC
TAGTCAGCCCTCAGTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATC
TGCCTCAGAACAGGGGAAACGCCGGGGCCCAAGAATTGGAAGTGTGTGGC
CGGGCATAAATCTTTTTTCTCTCTTCCCTTTCTCTCCCTCTCTTAATACT
TTTTCCTTTCCTTTTTCTTCTTCTTTTCATTTCTCTTTTTCTTTCACTTT
TTCTCTCTTTCCTCTTACTTCTCTTTCTCTTTTTCTATTTTCTTCATCTT
TCTTCTTTCTTTATCTTCTCTCTTCCTTTCTATCTCTCTTCTTCTCTTTC
ATTCTTTTTCCTTTCCTCATTATTCACTTTCCAACTTCTACTCAACTCTC
TCTCTCTCTCTCTACTCATCCTCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_k06.g1 MSMg01no123_k06.g1 CHROMAT_FILE:
MSMg01no123_k06.g1 PHD_FILE: MSMg01no123_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:38 2005
         (561 letters)



>mm_chr10_52806242_52807202
          Length = 961

 Score = 1069 bits (553), Expect = 0.0
 Identities = 559/561 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaaatgaggaatagacaaaaagcttagagctcttcatggtgagggaataaaagatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gcaaaatgaggaatagacaaaaagcttagagctcttcatggtgagggaataaaagatttc 503

                                                                       
Query: 61  ttaaaagagaatggccagggcttgatttaggaaggatgctcatataaggctgccttgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaaaagagaatggccagggcttgatttaggaaggatgctcatataaggctgccttgcca 443

                                                                       
Query: 121 acgtggcatttactctgaatgtgaaggactagcaggagattagagaaggtgtgaaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 acgtggcatttactctgaatgtgaaggactagcaggagattagagaaggtgtggaaagaa 383

                                                                       
Query: 181 tattttaggtagtggtgtcgtcacctgaaaagattctcaagtagggtaaagttatgttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tattttaggtagtggtgtcgtcacctgaaaagattctcaagtagggtaaagttatgttca 323

                                                                       
Query: 241 ttctgggggttttcagaagccagggtaactgaatcacagggttgaggtagagaaatcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttctgggggttttcagaagccagggtaactgaatcacagggttgaggtagagaaatcagg 263

                                                                       
Query: 301 gaggccggcagagcacacagagccctatatatcttagaaagaaatttgtaattgcagtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaggccggcagagcacacagagccctatatatcttagaaagaaatttgtaattgcagtag 203

                                                                       
Query: 361 gatgtaggaccatgaaagtcagcctggttcctggttgagctaaggttagaaaccccggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gatgtaggaccatgaaagtcagcctggttcctggttgagctaaggttagaaaccccggtg 143

                                                                       
Query: 421 atacactagcaagattttgctgaaaggacccaggtatagctgtctcttgtgagactatgc 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 142 atacactagcaagattttgctgaaaggacccagatatagctgtctcttgtgagactatgc 83

                                                                       
Query: 481 cggggcctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  cggggcctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggc 23

                                
Query: 541 ccccaatggaggagctagaga 561
           |||||||||||||||||||||
Sbjct: 22  ccccaatggaggagctagaga 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)