BAC Information

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BAC

Clone NameMSMg01-123P24
Chromosome10 (Build37)
Map Location 123,190,499 - 123,190,769
singlet/doubletsinglet
Overlap genenone
Upstream genePpm1h, D630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
Downstream gene4930503E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123P24.T7 (MSMg01no123_p24.b1)MSMg01-123P24.TJ (MSMg01no123_p24.g1)
ACCAG333464AG333465
length1,2401,281
length of high quality
(start - end)
271 (140 - 410)230 (149 - 378)
definitionCHROMAT_FILE: MSMg01no123_p24.b1 PHD_FILE: MSMg01no123_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:29 2005CHROMAT_FILE: MSMg01no123_p24.g1 PHD_FILE: MSMg01no123_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGATTTTNNNAGAGCATTGGGCGCTATAGACTCCGATAGGGAGAGGAT
CCGCGGAATTCACTTAGACAGTGACACCCTTTTAGGCTCCACATGAAAGT
AGGGGGTGGGGACTTGTTTCATTAGAGAGACTCCAGAGGAGTGGTTGAAG
TTCAAACATGATAACAGGAAAGACTCATTGAAAATTACATTTTCAGGTAA
GTTAAAAATAGATTTGAAAATAATCAAAGTCACATGAGTAGGTTCTTCCT
CTAGAGCTCTATTAGTTAGGATGTTCAAGCTTGGGGGAAAACTGTGATGT
GGTTTCATATGGTACTGGGCTTCCTCCAGGTTAGTCAGCTCTTTATACAC
TTATCTATTATCGTTCTGGTCCTCACAGAGATGGGCTGTAAAGCAATTTT
GTCCAAAGGTGATTCTCTGTTTCCATCCTTGTTCAGCAGGTCAGAAGAAA
AGTGATGTACAGTTTTTTTTCTCGCCACGNATCTTACCCCCCCCACCCAA
AAAAAGAGGGCGGCGCGGCAGTCTAGTCCACGGAAGGAGATATGCCTTCT
ACTATAGACTTAAATGTTACCAGAGAGTTCTATATCTAGACAGACTGCCT
TGTTTGTAACGACGGCGTGCTCCTAACCCTCTAGGATCATGAAAGCTACT
TCCTGCTGCATACATGCTCCCTAAGAGAGGCTGCCTCTGCACGATACTTG
CTTCCCTACACACCTTGTCTTATCATACAGACCACTGCTACGTCCCTCTC
CCCAGCTTGCCCACTCCTACCCCTTCCTCATCCTCCCGTCTGCGAATTCC
CCTCCCGCTACCTCGTCCTCACTCCCCTCATTCCCTTCTCCTTTCCTTTC
CCCCTTCCCTTCCCTCCACACTTTATCTCCGCGTCTATCCCTCCTCCCTT
TGCTCCCCTTCCGCCTCTCACTCCCATACCCCTTTCCTCCCCCTCTCACC
TCCCCTTCTTCTTCTTTTCTCTACACTCTTACTTTTTCAGCTTCCGCCCC
CTCCCACTTCCCCCCCCCCCTCCTCCCCTCCCCTTCTTCCCCTTCTCTTA
CCTAACCCTCCCCTGTCCCTATCCTTCTACCCCCTATCTTTCTCCTCACC
CCTCATCTCCTTATTATGTATTTGTCATCCCCCCTCATCTTCCCCTCCAC
ACTCTCCTTCTCCTCTATCTCCCACATCCTACCTCTCTGCCCCATCTCAA
TCCTGCCTATCAGTCTCTCCCTCTCCCCTACTCTCCTGGT
NAGAGACTTTTTATACCGATGGAGTCTGGGGCGCCGANXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGCCCCTCAGAGTCAACT
AATTTGGACCCTGAGGCTTTTAAAAGACCCTGAACCACCAACCAAANAAC
ATACAAGGGCTGGACTTAGGTCCACTCCATACCCCCACACACACACATAT
GTAGCATAAGTGCAGCATGGTCTTCATGTGAGTCCCCAGCAACAGGAGTG
GGGACTTACCTCGACTCTGTTGCCTGCCTGTGGACCCTGCTCCCCTAACT
AGGTATATTGTCTGGCTTCATTGGGAAAGGATATACCTAGTCCTATAGCA
ACTTGAGGTGCCAAGATCCATCTTGCAATTAAAAAACAATATCAAGTGCT
TTTTAAATTCTTTCTAAAACAATTCTATGTGTAAGAGCTTTCCACAATAC
ATGTTGCTTTTTTTTTTCTATACTTCATACAAACCCTCCCCACATAAAAA
AAAGGTGGTTCTCTAGTCCCTGCCAAGGAGCTGCCACTTGTGTGGATACT
CCGCATAAAAAGGCTCCCCTTGCCCATGCCCTCTCGGCCAGAGGCCTGAC
CTGTCAAATTGCCCCTACTTCTGCTGTAGTGCATGTCTGCCCACCCTGGA
TGCCCCTGATATATAGACCCTCACCACACCTTCTGTATCTGAATATACTG
AAAACGCCCGAACGTCCCTACCACCCACCCCTCATGAGTCTGCTTTCTAG
CCCCCCCCCCACCTTGCAGCCTATGTGCCCGCCACTCACTCCACCGCTCA
CTCCTGCCTCCCTGCGCTCCCCGCCACCCCCCCCCCCGCTCCTGCCCGCC
TTCCCCCACTGGTACGACCGCCCTTTTCTGATCCCCCCCTCACCCGGACC
GTCTTACTTTCCTCCTTCCACTTGCCACTTATCCTCTCTGTGTCTCCTTT
CCTCATTACTATTTTCTCTCTTCCTTCTGTCCACCTTCAAATCTCCATCA
ACTTCGCCTCCCCCACCTCCTTCCCTCACACCGTCCCCCCTTCTCCTCCC
CCCCTCTCCCCCACAACCCTCCCTCTTCCCTCTCTCCCTTCTCCCGCCCA
ATTCCCCTCCCACACCTCCCTGCCTCCATTCCCCTCTTCTCTTCGTCTCT
ACTACTCACTCCTCCCCTTTCTCCCTCCCTTCCTCCTCTCTCTCCCCCCA
ACTCCTCTCAACCCCCTACTTCCTCTTCTCCCTCTCTCCCTCTCCATCTA
TTCTCCTCCCACCGCCCACCCCCTTGTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_p24.b1 MSMg01no123_p24.b1 CHROMAT_FILE:
MSMg01no123_p24.b1 PHD_FILE: MSMg01no123_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:29 2005
         (271 letters)



>mm_chr10_123190299_123190969
          Length = 671

 Score =  524 bits (271), Expect = e-153
 Identities = 271/271 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggttgaagttcaaacatgataacaggaaagactcattgaaaattacattttcaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtggttgaagttcaaacatgataacaggaaagactcattgaaaattacattttcaggta 260

                                                                       
Query: 61  agttaaaaatagatttgaaaataatcaaagtcacatgagtaggttcttcctctagagctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttaaaaatagatttgaaaataatcaaagtcacatgagtaggttcttcctctagagctc 320

                                                                       
Query: 121 tattagttaggatgttcaagcttgggggaaaactgtgatgtggtttcatatggtactggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattagttaggatgttcaagcttgggggaaaactgtgatgtggtttcatatggtactggg 380

                                                                       
Query: 181 cttcctccaggttagtcagctctttatacacttatctattatcgttctggtcctcacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctccaggttagtcagctctttatacacttatctattatcgttctggtcctcacaga 440

                                          
Query: 241 gatgggctgtaaagcaattttgtccaaaggt 271
           |||||||||||||||||||||||||||||||
Sbjct: 441 gatgggctgtaaagcaattttgtccaaaggt 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)