BAC Information

Click to search

BAC

Clone NameMSMg01-124G19
Chromosome10 (Build37)
Map Location 105,475,364 - 105,475,698
singlet/doubletsinglet
Overlap genenone
Upstream geneTmtc2, EG627573, BC067068, Ccdc59
Downstream geneEG667758, EG639162, Ppfia2, Olfr1556-ps1, 8430416H19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124G19.T7 (MSMg01no124_g19.b1)MSMg01-124G19.TJ (MSMg01no124_g19.g1)
ACCAG333783AG333784
length1,3441,267
length of high quality
(start - end)
519 (128 - 646)277 (132 - 408)
definitionCHROMAT_FILE: MSMg01no124_g19.b1 PHD_FILE: MSMg01no124_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:30 2005CHROMAT_FILE: MSMg01no124_g19.g1 PHD_FILE: MSMg01no124_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTCCTTTACATTGCGCGCTATAGACTCCTAAGGGAGAGGATCCGCGG
AATTCCTAAAATATTATCAGTACTTTTATAAGCCCTTTTATAGTGGGACT
CCTGTGAGATCCTTCCTGATAGTCCCAACTGCAATGTAAACTTTGCCATC
TCGAAGAGACACCAGTTAATTGCTTCTACTACTCAGAGCACATTGCAAAA
GGTTGTAAAGCCATTAACCAAAGATCATAAAAAGGTAATTTACTATAGCT
GCTGGGACAGAAGATAAAATGTTGACTGGGTTTATCTATATAGAACATCC
TTAATAACTTAGTTATTGTTTTTAACTCTCCATGAACCATTAGAGCTGTG
ACAGATGATGAGTGGTTAGCCAGATAATTACTCCTTATGTACTCTGTTGT
AAACTTCTTATTCAGTTTATGATTTGAATTTATGTGTAAACATTGATGAA
TATTTTTACCATGCGATGATCTATTTTGGAAGATGGTTAAGTGCTAAGGA
CCAAACGAGGAACACAAACTTCCTTTGTCCTGCTTAGGATCATTAAGATC
ATTTCCCTTTTTTTCTTAGAGAGCTTTCATAGGAAACTTTTTACAACTTA
AAATTAAATACTAAATTTGCTTTTCAAAGTGTCCCTTTTTCTTCCTGCAA
CTTCCACTAGCAGGCTGAAAGAGCCACGTAGTTTCTGCTCTCATTCCTTC
TATGACAGTCTATGATGTGAAAGCCTGATAAACTTTTTACTTCCCCAAGT
CGCTTTTGGCTATGGTGTTTTTCTCATAGCCATAGTACCCTTAACTAGGG
TTGTCTATACTTTTTACCTTTCCTATACCTTATGCACCGTCTTAATCCCT
TGTTATCCCTGACCATACTTTCATTGAAAATCCCTTCCTACATTTTTTCC
CAATGAAATATTGAATTTTTTAATCCCTAATAAATTCCTTTAAACACCCT
ACAATATTTTCCCCAAGGTTTGCTTTCTGTTTACCCTTTTACTCAATTTT
TTTCCTACTTATTTTAATAATATTCTTGTCTCTCTTTCCTTGGATTCTCT
AACCCTGGTATTCCTTGTGAAAAAATATCTCTTCAAAGATAATTGCCTCC
CTTCCCAAATCTCAACTTCGAATTGTGTTACACCGTGTTTTACCCCTCTT
CTGTGATGTCTCTCGCCTTTAGTGCTTTGCCCTTAATTGGGTCCGTGTGT
ACCTACCAAATTATATTACACTCTCCCAATATAAACTCCCTCTCTTTTCT
CTCCTCATCTTTGTTTGTCTGGCAATAGTACATAACTTTCTCTCTCAACA
ACACACATAATCTATCCTCCTTACCACATATCTTTGCTTCTTTC
AAATTTCTTTTATAACCATGGCAGGCGTGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGGCTCTTTCATAGGAT
CATTTACTTGTAGTTACCCCTTATATTCCCTTTTTCTGGCTGTACTACCT
ATTCATTTACTAGAAGGTATGTTTGTTGCTTCCATATTTTGGCCACTGTA
CACAATGCTGTTTTTAATATCCACATACAAATTATCATATAAATACATTT
ATATTTGGGCAAATATAAAAAATATGATTGCTGGATTGGGTAATAAGAAT
GTTTATTTGTATGTGAAACTCCCAAATGTCTTCCAACATGACTATACAGT
CTTGTACTCCCACCAGAAATGAGTGGCAATTATTTGAGTTTCAGAAAATA
AAGTTAAAGAATTATCTCCAAGAAGAAAAGCAAGCAAGCAAGCAAGCAAG
CAAGCAAACAACCTTTCATAAAGCCCAAATGAGAAAACAACTTATCTCAT
TAAAGAGTAAAGATAAAACATATATAGAAGAGTTAACATCCATAAGAACC
AAGGGAATTTGTTTTTTTTAAGTATTATGCACTTTTAGAAATTAAAAATA
AAAAGTTAAAAACAAACATAGCAAATTAAAATATAGTAAGATACAATAAA
AATCACTACTTTGAACTTGGGCAAGGCAAACCCGACAGTAGGAAAATCAC
TCCAAGAGCAGTTATGTGGACCAAAGACTCATTTGCTCCAACGCTCAGGA
GCCCTGTCCAAATTCTGAACTGAAAATCACAGTCCATACATATAGGACCC
GTTTCAGACTGGTGTAGGCTCTGTTCTTGCTTCTTCGTTTCCTATGCTCC
CTATGGGCTTTTTTTCCCAAACCTTAACGAAACTTTTGTCTTCCAGGAGC
CTTCCTTCCCCTCTAATTTCTTTCCCTCTTCCCTATTTCTTCCTTCCCCT
GGTCTCTCTTAATCTCTGAACGTTTGTCAATTTGTGTTCGCTACTCCCTA
AAATAACTTGTACTTTTTCTTATGATAAATCCTAACTGTATTCGCAATCT
GCTCTAATTAGTAACTTCTGCTAATAACTTTGTATCTAATAACACTCCGG
TAAAAGCTTTTACCCCTTCATATTTTCTTTTAATAAAACAATCTTCCCGT
TTCTTTAATAAAATAACATTTTTCTTTAAGTACAAAAATAACCTCTCTAT
TAAACAATTCGCACTACTTTGCGTCTTCTCATTCCTCACACTTCTATGAT
CTTTCCCTCTTGCAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_g19.b1 MSMg01no124_g19.b1 CHROMAT_FILE:
MSMg01no124_g19.b1 PHD_FILE: MSMg01no124_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:30 2005
         (519 letters)



>mm_chr10_105474780_105475698
          Length = 919

 Score =  632 bits (327), Expect = 0.0
 Identities = 333/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 185 gttattgtttttaactctccatgaaccattagagctgtgacagatgatgagtggttagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 gttattgtttttaactctccatgaaccattagagctgtgacagatgatgagtggttagcc 860

                                                                       
Query: 245 agataattactccttatgtactctgttgtaaacttcttattcagtttatgatttgaattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 agataattactccttatgtactctgttgtaaacttcttattcagtttatgatttgaattt 800

                                                                       
Query: 305 atgtgtaaacattgatgaatatttttaccatgcgatgatctattttggaagatggttaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 799 atgtgtaaacattgatgaatatttttaccatgcgatgatctattttggaagatgggtaag 740

                                                                       
Query: 365 tgctaaggaccaaacgaggaacacaaacttcctttgtcctgcttaggatcattaagatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 739 tgctaaggaccaaacgaggaacacaaacttcctttgtcctgcttaggatcattaagacca 680

                                                                       
Query: 425 tttccctttttttcttagagagctttcataggaaactttttacaacttaaaattaaatac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttccctttttttcttagagagctttcataggaaactttttacaacttaaaattaaatac 620

                                              
Query: 485 taaatttgcttttcaaagtgtccctttttcttcct 519
           |||||||||||||||||||||||||||||||||||
Sbjct: 619 taaatttgcttttcaaagtgtccctttttcttcct 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)