Query= MSMg01no124_m01.b1 MSMg01no124_m01.b1 CHROMAT_FILE:
MSMg01no124_m01.b1 PHD_FILE: MSMg01no124_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:16 2005
(278 letters)
>mm_chr10_47915319_47915996
Length = 678
Score = 503 bits (260), Expect = e-147
Identities = 272/276 (98%)
Strand = Plus / Minus
Query: 3 ggataaagggggctttggggatagcatttgaaatgtaagtgaagaaaatatctaataaaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggataaagggggctttggggatagcatttgaaatgtaagtgaagaaaatatctaataaaa 451
Query: 63 aaagaaaaagaaaaacaagatcaatctttcattttaacatgaatccaaaaaaggaaagag 122
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaagaaaacgaaaaacaagatcaatctttcattttaacatgaatccaaaaaaggaaagag 391
Query: 123 tacgctctttaatagataaaattgctatttttttgacagggtttgtctgaataactttag 182
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 390 tacgctctttaatagataaaattgctattcttttgacagggtttgtctgaataactttag 331
Query: 183 atttattggaacttgttctgttctgttcaaataaaagataaaaatcaatgcaaagccgga 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 330 atttattggaacttgttctgttctgttcaaataaaagataaaaatcaatgcaaaaccgga 271
Query: 243 cgttgtggcacatgcgtttaatcccagcactcagga 278
|||||||||||| |||||||||||||||||||||||
Sbjct: 270 cgttgtggcacacgcgtttaatcccagcactcagga 235
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no124_m01.g1 MSMg01no124_m01.g1 CHROMAT_FILE:
MSMg01no124_m01.g1 PHD_FILE: MSMg01no124_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:16 2005
(403 letters)
>mm_chr10_47780877_47781680
Length = 804
Score = 542 bits (280), Expect = e-158
Identities = 373/404 (92%), Gaps = 5/404 (1%)
Strand = Plus / Minus
Query: 3 ttaagg-ttcaaaattactactttgacagtagtgtatctaagaatattattcatatggtc 61
|||||| || ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 604 ttaaggctt-aaaattactactttgacagtagtatatctaagaatattatgcatatggtg 546
Query: 62 ctgggtttgataaatgttaaataatatttaaacattaataaagtgaaactgtaattcaat 121
|||||| ||||||||||||||| |||||||| |||||| |||||||||||||| ||||
Sbjct: 545 gagggtttcataaatgttaaataacatttaaaccttaatatagtgaaactgtaatgcaat 486
Query: 122 aaaaagtgattgtcattttgtgcctttgctttgattctgtttggggacataacagaggtg 181
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaaaagcgattgtcattgtgtgcctttgctttgattctgtttggggacataacagaggtg 426
Query: 182 aggaaactaattagtggacag-ttttcatgttctgggtttccattaatctttctaagtat 240
|||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct: 425 aggaaactaattagtggatggtttttcatgtactgggtttccattaatctttctaagtat 366
Query: 241 gtaataaga-actcagattactcaatcacaagtataatttatttaatctaaataactacc 299
||| ||| | ||||||| ||||||||||| ||||||| | || ||||||||||||||
Sbjct: 365 gtattaa-acactcagagtactcaatcactagtataagagaggtagtctaaataactacc 307
Query: 300 aaaatgtcattctgtgatcaagggtaagattatgtatatttttagttactgctaatttga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaatgtcattctgtgatcaagggtaagattatgtatatttttagttactgctaatttga 247
Query: 360 ggatgtttaactatgttctctttagtaattaacagccacataca 403
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 246 ggatgtttaactatgttctgtttagtaattaacagccacataca 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 804
Length adjustment: 9
Effective length of query: 394
Effective length of database: 795
Effective search space: 313230
Effective search space used: 313230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
