BAC Information

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BAC

Clone NameMSMg01-124N05
Chromosome10 (Build37)
Map Location 17,382,908 - 17,383,501
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124N05.T7 (MSMg01no124_n05.b1)MSMg01-124N05.TJ (MSMg01no124_n05.g1)
ACCAG334080AG334081
length1,2781,276
length of high quality
(start - end)
594 (117 - 710)332 (130 - 461)
definitionCHROMAT_FILE: MSMg01no124_n05.b1 PHD_FILE: MSMg01no124_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:26 2005CHROMAT_FILE: MSMg01no124_n05.g1 PHD_FILE: MSMg01no124_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCACTCTG
TGTAGCAGCCCCATAAGGTTCTGCCTCCCAAGTGCTAGAATTAAAGATAT
GCCCTAAAACTCCCCGACTCAAGCTGAAGTTTAAAATTTCCTCATAAGAC
CTATACCAAACTCAAGTGCTTCCACCCCAACAGTTTTCAAGCTATTTTTC
TGAAAATAATATGGGTCTCAGAGAAAGCATAGCTAAGGAAGTCAAGACAA
AGATACAGGGTGTATATATGAAGGCCGAGCACATGAACTACTGGCACCTC
CTCTAGAATTCAGCCCAAATTGCTGTTTTTGTTCTACTGAGGACATTATA
ATACATTACAAAGGTTTTCTCAGAGTCTCTCTGCCTCCAACTTGATGATC
AAGATGTAATCTCTCAATGCCTGCCTGCCTGCTGCCATGCTTCCGGTTCA
TGATAGACATGGACTAACCCCCTGAACTGTATTAACAACCCCCCAAATCT
AATGCTTTCTTTTTATGTTACTTTGATCACGGTGTCTCTTCACACCATGC
GAGATCATTAAGACATGGTTAGAACAGGCTGCATACCACTGGACGTAGTG
GCTCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGTTGGATCTCA
GTGAGTTCAAGGTTAGCCTGGTCTGCAATAAGAATTCCAGGACAGCCAGG
AAAACCCTGTCCTAAAATACAAACAAAAAACTCCTAACAACAATAACAAA
AAACAGGGTGCAAATATTAATTTATATTAAATAAAGCTTGACTGACTGAA
CTAGGACTCAGTGGCAGCCATACAGAGATGTCTTCCCCAATAGTTTGCTT
AATTTTCCCCAAATGCAAAGCCTGGAATTTACCAGTGTTTCTGGGTCCTG
GAACCCAAAATGAACACCCCTTCTTTTTCTCAGCAGTTTTGTGCCATCAC
CCTTTGGTAACACCCTTTTGATAAACCCCCTATCATTGTTATTAGTCCTC
TAGGAATACTCGGTTCTTGAATAAAAATTACCTCAAAACTTTACAAGTCC
CTGAACCTATGAACCCCGTGGGTGAAATACCTGAAAATGTGTTGGTTCAA
AGTTTAATAACCTTCTATCGATTTCTCCCAAAAAATTTCCTTTTGGCCCC
AAGAGGCTTCCATCTTGATCAATATGCTTGTGGTTCCCCCTGGGTCTTTA
TTTTCCCAATCACGAGGGTTGCTCTCCCTTATGTTGAACTAACTATATTA
TGACCACAAGCGCTGCAGCTCGTATAAA
CGACCTCTTTTAAAACATGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGATTGGTTNNNTGAANTGN
AGAGNGAGGGNNATTCTTTTAAGACCCCCCAAATGGAAGNCTTTAGAGTT
GCCTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCCCCTTCCTGGAG
GCATTGCAGAAATTACTGCCACTATCAAGGACTTGAAAGATGCAGGGGTG
GTGGTTCCCACCACATCTCCATTTAACTCTCCTATCTGGCCAGTGCAGAA
AACAGATGGATCATGGAGAATGACAGTTGATTATCGAAAACTAAATCAGG
TGGTAACTCCAATTGCAGCTGCTGTACCAGATGTAGTTTCGTTACTTGAG
CAAATTATTTTTTCTCCTGGCACCTGGTATGCGGCTATTGATCTGGCAAA
TGCCTTCTTTTTTTTACCTGTCCATAGGACCACCAGAAGCAATTTGATTT
CAGGTGGCAAGGCCAACAGTATACCTTCACAGTTTTGCCTCAAGGATATA
TTAACTCTCCTGCCCTGTGTCATAATTTAGTTAGAAGGGATCTTGATCGT
TTGGATCTTCCACAAAATATCACATTGGTGCACTATATTGATGACATTAT
GCTGATTGGACCAAGTGAGCAGGAAGTAGCAACCACTTTGGACTCATTGG
TAACACATATGCGTATCAGAGGATGGGAAATAAATCAAACCAAAATTCAA
GGACCATCTACCTCAGTGGAAATTCTTAGGAGTCCAGTGTTGTGGGGCAT
GCATAGATTTTCCTTCTAAGGTGAAAGAAAAGTTATTGCACCTAGTCCCT
TCCTAAAACCTAGAAAATAATCACAACGTTTTAATGTCTCTTTTTTGGAT
TCTGGAGAACAACACATCCCCTCACTTGGGGGGTGGTTACTTAAGCCTTA
TTTTCCAAGTGACTTTGAAAAGCTGTTTATCTTTTGTGTTGGGCCCGGTA
ATCTGAAAAAAGTCCCTTTTAAAAGGGCTAGGGCTTGCTGTGCAAGGCTG
TTTTTTCCACTTTGGACCCTATTGAATCCCATATAACCCCAATGGTAATT
TGAAGGTGCTCTGTGACCTTTAATAAAAATGGTTGGTATTGTAAACTCTT
TTGGTAAGGTCTCCTGGTGGTGTGATACCCAAGTAAAAAAACTCTTTTGG
GATTTTTGGTAAATTAAGGTTCTTCTCCATCTTGTGGCAAGCAAATCATA
TTTCCTTCTTTGTAATAAAATGTNCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_n05.b1 MSMg01no124_n05.b1 CHROMAT_FILE:
MSMg01no124_n05.b1 PHD_FILE: MSMg01no124_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:26 2005
         (594 letters)



>mm_chr10_17382708_17383702
          Length = 995

 Score = 1019 bits (527), Expect = 0.0
 Identities = 578/595 (97%), Gaps = 2/595 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcaagctgaagtttaaaatttcctcataagacctatacc-aaactcaagtgcttccac 59
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 actcaagctgaagtttaaaatttcctcataagacctatacctaaactcaagtgcttccac 260

                                                                       
Query: 60  cccaacagttttcaagctatttttctgaaaataatatgggtctcagagaaagcatagcta 119
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaacagttttcaagctatttttctgaaaataatatgggtctcagagaaagcatagcta 320

                                                                       
Query: 120 aggaagtcaagacaaagatacagggtgtatatatgaaggccgagcacatgaactactggc 179
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 321 aggaagtcaagacaaagatacagggtgaatatatgaaggccgagcacatgaactattggc 380

                                                                       
Query: 180 acctcctctagaattcagcccaaattgctgtttttgttctactgaggacattataataca 239
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 acctcctctagaattcagcccaaattgctgtttttgttctactgagtacattataataca 440

                                                                       
Query: 240 ttacaaaggttttctcagagtctctctgcctccaacttgatgatcaagatgtaatctctc 299
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 441 ttacaaaggttttctcagagtctctctgcctccaacttgaggatcaggatgtaatctctc 500

                                                                       
Query: 300 aatgcctgcctgcctgctgccatgcttccggttcatgatagacatggactaaccccctga 359
           |||||| | ||||||||||||||||||||||  ||||||||||||||||| |||| ||||
Sbjct: 501 aatgccggtctgcctgctgccatgcttccggc-catgatagacatggactgaccctctga 559

                                                                       
Query: 360 actgtattaacaaccccccaaatctaatgctttctttttatgttactttgatcacggtgt 419
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 actgtattagcaaccccccaaatctaatgctttctttttatgttactttgatcatggtgt 619

                                                                       
Query: 420 ctcttcacaccatgcgagatcattaagacatggttagaacaggctgcataccactggacg 479
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 620 ctcttcataccatgcgagatcattaagacatggttagaacaggctgcataccactggaca 679

                                                                       
Query: 480 tagtggctcacgcctttaatcccagcacttgggaggcagaggcagttggatctcagtgag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tagtggctcacgcctttaatcccagcacttgggaggcagaggcagttggatctcagtgag 739

                                                                  
Query: 540 ttcaaggttagcctggtctgcaataagaattccaggacagccaggaaaaccctgt 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttcaaggttagcctggtctgcaataagaattccaggacagccaggaaaaccctgt 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space:   575240
Effective search space used:   575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)